The authors thank Manon Ranger and Alexandra Schulz for their assistance in preparing this protocol.

This study was approved by the Institutional Animal Care and Use Committees at Columbia University and the New York State Psychiatric Institute.
1. Tissue Preparation
<ol>
	<li>Order timed pregnant rats from vendor.</li>
	<li>Follow timed pregnant rats by observing their growing abdomens in the weeks after their arrival and subsequently looking for pups on the expected delivery date by inspecting the cage every 2 h until delivery begins.</li>
	<li>Remove pups with a gloved hand by their tail before their first feed for unprimed pups (no white milk belly is apparent when viewing abdomen) or after the first feed for primed pups (at which point a white stomach will be visible on their abdomen) as described in the timeline (Figure S1). 
	Note: The first colostrum feed is termed as priming the pup; thus, a pup is unprimed until the first feed, after which they are colostrum-primed.</li>
	<li>Quickly decapitate the unanesthetized pup using sharp, clean surgical scissors.</li>
	<li>Remove the brain by cutting the skin down the midline and top surface of the skull to the nose. Then, using forceps, gently pry away the bone to expose the brain (Figure 1A) and localize the bregma, marking it with a pen as the bone plates are removed (Figure 1B).</li>
	<li>Rapidly place the whole brain in a polymethyl methacrylate brain mold at room temperature for coronal slicing at room temperature (Figure 1C).</li>
	<li>Without delay, make 500 &#956;m-thick slices using a fresh razor blade. Lay the slices rostral to caudal in a Petri dish to maintain orientation of sections (Figure 2).</li>
	<li>Quickly add artificial cerebrospinal fluid (ACSF; 1.0 mM KH2PO4, 26 mM NaHCO3, 118.6 mM NaCl, 3.0 mM KCl, 203.3 mM MgCl2-6H2O) without glucose and incubate the slices for 60 min at 28-30 &#176;C, constantly stirring on an orbital shaker to metabolically and differentially challenge the unprimed versus colostrum-primed tissues.</li>
	<li>Identify the brain nuclei that are required to punch using a brain atlas33 and anatomic landmarks on the tissue section. Place this slice with the nuclei of interest in a Petri dish and move it to the dissecting microscope.</li>
	<li>Once visualized, quickly punch out 4 of 6 different nuclei using a coring tool, selecting the size to best punch the nucleus in question and consistently between samples (Figure 2). 
	Note: The remaining brain slice will now have a hole where brain tissue was removed. In this study, we excised the following nuclei using the below coordinates. All anterior/posterior (A/P) coordinates are from Bregma (except NTS, which is with reference to the Calamus Scriptorius). All dorsal/ventral (D/V) coordinates are from the surface of the cortex (except NTS, which is from the surface of the medulla). The following coordinates include A/P, medial/lateral (M/L), and D/V in mm: 1) solitary tract nucleus (NTS, A/P, 0.4 to 0.8; L, &#177; 0.2; D/V, 0.3 (from the surface of the medulla), 2) paraventricular nucleus (PVN, -0.8; &#177; 0.2; 0), 3) supra-optic nucleus (SON, -1.1; &#177; 1.4; 4.3), 4) cortex (CX, partial cortex area 1, -2.8; &#177; 1.5; 0.6), 5) striatum nuclei (STR, -0.0; &#177; 1.6; 1.8), and 6) medial preoptic nucleus (MPO, -0.6; &#177; 0.2; 4.2).</li>
	<li>Rapidly immerse the punched nuclei in 0.06 mL of ice-cold, protein extraction buffer containing protease inhibitors and phosphatase inhibitors for 60 minutes (see step 2.3).</li>
</ol>
2. Protein Extraction
<ol>
	<li>Prepare the protein extraction solution using the protein lysis kit (Table of Materials) on the day before expected pup delivery.</li>
	<li>Thaw (on ice) the frozen (-20 &#176;C) aqueous solution of the protease and phosphatase inhibitors of the lysis buffer kit and place the lysis buffer and DMSO solution of the proteases/phosphatases inhibitors on ice.</li>
	<li>Add 1.85 mL of lysis buffer into a clean, ice-cold 15 mL tube. Then, add 0.1 mL of aqueous solution of inhibitors and 0.05 mL of DMSO-dissolved inhibitors. Finally, cap and briefly vortex the tube and keep it at -20 &#176;C until use.</li>
	<li>Label 24 clean microcentrifuge tubes (0.5 mL each) for the lysis procedure. Designate 12 tubes per brain for the colostrum-unprimed group (U) [6 left (L) and 6 right (R) brain nuclei], and label according to nuclei acronym, side, and condition (e.g., NTS-L-U, NTS-R-U, etc.). Label the second group of 12 tubes for the colostrum-primed samples.</li>
	<li>Label two additional sets of tubes as done in step 2.4 for the stock protein extracts (using 1.5 mL Eppendorf-style tubes) and for the first set of sample preparation (using 0.5 mL tubes). Keep these tubes in two separate, labeled freezing boxes (each designed for 100 tubes). One box will be used for the unprimed samples and the other for the primed samples.</li>
	<li>Thaw the lysis solution on ice on the day that the pups are delivered, and while incubating brain slices in ACSF, aliquot 0.06 mL lysis solution into the lysis procedure tubes (from step 2.4) and add nuclei punches and incubate in ice for 60 min.</li>
	<li>Centrifuge the incubated lysed nuclei for 30 min in a cooled mini-centrifuge at 14000 rpm (10,000 x g) and carefully aspirate 0.055 mL of supernatant with a properly set pipette. Transfer the supernatant into the pre-cooled 1.5 mL stock tubes (from step 2.5) and put them on ice. Before freezing (at -20 &#176;C) the protein stock tubes, transfer 0.012 mL of supernatant into the 0.5 mL pre-cooled tubes for the first sample preparation (from step 2.5) and leave them on ice.</li>
</ol>
3. Sample Preparation for In-capillary Protein Measurement
<ol>
	<li>Use a kit and prepare the reagents for separation according to manufacturer&#8217;s directions. Add 0.003 mL of master-mix reagent to each of the 12 samples in the 0.5 mL labeled tubes (from step 2.5) on ice that contain 0.012 mL of the protein extracts.</li>
	<li>Turn on the heating block to 95 &#176;C and add 0.004 mL of the reagent prepared in step 3.1 to a biotinylated molecular-weight (MW) ladder in a tube with 0.016 mL of deionized water. To denature the ladder and samples, place the ladder tube and the 12 samples of unprimed protein extracts in the heat block at 95 &#176;C for 5 min and store them at 4 &#176;C until use.</li>
	<li>Repeat steps 2.0 to 3.2, from protein extraction to sample preparation, for the nuclei punched from colostrum-primed rats.</li>
</ol>
4. Electrophoresis Preparation
<ol>
	<li>Thaw the biotin labeling reagent (stored in the deep freezer at -80 oC) on the bench and prepare the protein detection kit on ice at 4 &#176;C following the manufacturer&#8217;s directions.</li>
	<li>Mix 0.15 mL of luminol with 0.15 mL of peroxide and load 0.01 mL into 25 wells (row E, wells 1-25) of the plate for the automated Western machine. Load 0.008 mL of Streptavidin-HRP from the kit into wells D1 to D25</li>
	<li>Load 0.01 mL of the antibody diluent solution into wells C1 to C25 and B1.</li>
	<li>Spin the 24 protein samples and ladder tubes briefly (2-3 seconds) in a minicentrifuge to pool down evaporated water from the tube caps.</li>
	<li>Load 0.003 mL of 12 unprimed samples into wells A2 to A13, 0.003 mL of 12 colostrum-primed samples into wells A14 to A25, and 0.005 mL of the biotinylated ladder into well A1.</li>
	<li>Leave row F empty and load 0.45 mL of wash buffer into each of the 5 compartments in each of the 3 rows below row F. Cover the plate with its plastic lid to avoid evaporation during the remaining procedures.</li>
	<li>Briefly vortex the thawed biotin labeling reagent and add 0.15 mL of the reagent to its designated tube; then add to it 0.15 mL of the total protein reconstitution agent and mix them to homogeneity.</li>
	<li>Remove the cover from the plate and load 0.01 mL of agents 1 and 2 into wells B2 to B25. Cover the plate and centrifuge it for 10 min at 1,000 x g to remove any air bubbles from the various solutions. Use an empty plate in the centrifuge for balance.</li>
</ol>
5. Electrophoresis
<ol>
	<li>While the plate is spinning, open a run file in the automated Western machine-attached computer by indicating in the dropdown page from &#8220;file&#8221; to run a total protein assay and clicking the respective spot.</li>
	<li>Annotate the samples by well in the computer. Then, remove the plate from the centrifuge remove the cover and carefully peel off the aluminum cover from the separation solution compartments.</li>
	<li>Place the plate in the automated Western instrument, peel off the cover from the capillary cartridge box, insert the cartridge in its designated place, and close the door.</li>
	<li>Click the &#8220;RUN&#8221; button, and when prompted with the type of the assay (&#8220;total protein&#8221;), type in the name of the samples (for example, &#8220;unprimed 2-13 and colostrum-primed 14-25&#8221;). Click &#8220;OK&#8221;, and when prompted by the activated run date and ID number of the run file, make a note of the time when the run ends.</li>
	<li>At the end of the run (170 min after the start), open the instrument door, remove the capillary cartridge, and discard it into the sharps disposal. Discard the plate in the biological matter disposal.</li>
	<li>Click the separation curves icon in the analysis page of the run file, and check that all the samples have run properly and are showing multiple protein curves in all capillaries.</li>
</ol>
6. Analysis of Signaling Proteins
<ol>
	<li>In a labeled 1.5 mL tube, add 0.003 mL of rabbit anti phospho-eIF2a (p-eIF2a) antibody and suspend it in 0.3 mL (1:100 dilution) in antibody diluent from the suitable detection kit. Then, keep it on ice.</li>
	<li>Label a luminol tube and add 0.15 mL of luminol and 0.15 mL of peroxide from this detection module kit and dispense 0.01 mL into wells E1 to E25 of a fresh, automated Western plate.</li>
	<li>Dispense 0.01 mL of the secondary anti rabbit antibody into wells D2 to D25, and add 0.01 mL of streptavidin-HRP from the kit to well D1.</li>
	<li>Dispense 0.01 mL of the primary antibody (from step 6.1) into wells C2 to C25, and add 0.01 mL of antibody diluent 2 solution to wells C1 and B1 to B25.</li>
	<li>Leave the row F wells empty and fill 0.45 mL of wash buffer into the 5 compartments of 3 rows below the F row.</li>
	<li>Briefly spin the refrigerated samples for 3 s, and add 0.003 mL of each sample to row A in the same order they were added for the total protein assay, starting from A2 to A25. Add 0.005 mL of the biotinylated MW ladder to well A1 and cover the plate.</li>
	<li>Centrifuge the plate as done in step 4.8. While the plate is spinning, open (in the automated Western-associated software and computer) a new run file and indicate in the dropdown page from &#8220;File&#8221; to run a molecular size assay by clicking the respective spot.</li>
	<li>In the assay page, type the sample names in each capillary, then type the name of the primary antibody in the allocated spot and the secondary anti-rabbit antibody below it.</li>
	<li>At the end of centrifugation, repeat steps 5.3&#8211;5.5, except the name given to the run file this time should be &#8220;p-eIF2a on unprimed 2&#8211;13 and colostrum-primed 14&#8211;25&#8221;.</li>
	<li>After the electrophoresis separation, check the run file for immune-reactivity peaks of antigens at sizes of 40&#8211;43 kDa. Where MW of peaks this size are missing, right-click below the curve and indicate inside the dropdown list to add MW to the peak, which ensures that the size and arbitrary quantity below the curve are recorded.</li>
</ol>
7. Processing the Results
<ol>
	<li>Open a spreadsheet file for total protein run in the automated Western run file and provide an ID number.</li>
	<li>Open the run file of the total protein assay at the analysis page at the curve mode and mark all the peaks in individual capillaries. Then, copy and paste them into the spreadsheet and sum the areas under the curve of all peaks recorded in the entire capillary.</li>
	<li>In a separate column, arrange the total amount of protein for each column with capillary numbers, names of the respective brain nuclei, and the ID numbers of the run files.</li>
	<li>Open a spreadsheet for the p-eIF2a antigen, and in a single column, record the area under the curve from each capillary side-by-side with its respective capillary number, name of brain nucleus, and ID number of the run file.</li>
	<li>Copy the total protein column (parallel to the p-eIF2a curve quantities) into a third spreadsheet and compute p-eIF2a:total protein ratios in a third column.</li>
	<li>Collect results from steps 4 to 6 for each brain nucleus, arrange them in groups of nuclei, and generate a bar graph.</li>
</ol>

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R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Viscerotopic+representation+of+the+upper+alimentary+tract+in+the+rat:+sensory+ganglia+and+nuclei+of+the+solitary+and+spinal+trigeminal+tracts.">Viscerotopic representation of the upper alimentary tract in the rat: sensory ganglia and nuclei of the solitary and spinal trigeminal tracts.</a> Journal of Comparative Neurology. 283 (2), 248-268 (1989).</li><li>Shapiro, R. E., Miselis, R. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+central+neural+connections+of+the+area+postrema+of+the+rat.">The central neural connections of the area postrema of the rat.</a> Journal of Comparative Neurology. 234 (3), 344-364 (1985).</li><li>Paxinos, G., Watson, C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> The Rat Brain in Stereotaxic Coordinates. , (1997).</li><li>Nayak, R., Pintel, D. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Adeno-associated+viruses+can+induce+phosphorylation+of+eIF2alpha+via+PKR+activation,+which+can+be+overcome+by+helper+adenovirus+type+5+virus-associated+RNA.">Adeno-associated viruses can induce phosphorylation of eIF2alpha via PKR activation, which can be overcome by helper adenovirus type 5 virus-associated RNA.</a> Journal of Virology. 81 (21), 11908-11916 (2007).</li><li>Zaborske, J. M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Genome-wide+analysis+of+tRNA+charging+and+activation+of+the+eIF2+kinase+Gcn2p.">Genome-wide analysis of tRNA charging and activation of the eIF2 kinase Gcn2p.</a> Journal of Biological Chemistry. 284 (37), 25254-25267 (2009).</li><li>Hollis, J. H., Lightman, S. L., Lowry, C. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Integration+of+systemic+and+visceral+sensory+information+by+medullary+catecholaminergic+systems+during+peripheral+inflammation.">Integration of systemic and visceral sensory information by medullary catecholaminergic systems during peripheral inflammation.</a> Annals of the New York Academy of Sciences. 1018, 71-75 (2004).</li><li>Klein, B. Y., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Oxytocin+opposes+effects+of+bacterial+endotoxin+on+ER-stress+signaling+in+Caco2BB+gut+cells.">Oxytocin opposes effects of bacterial endotoxin on ER-stress signaling in Caco2BB gut cells.</a> Biochimica et Biophysica Acta. 1860 (2), 402-411 (2016).</li><li>Kaltschmidt, B., Kaltschmidt, C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=NF-kappaB+in+the+nervous+system.">NF-kappaB in the nervous system.</a> Cold Spring Harbor Perspectives in Biology. 1 (3), a001271 (2009).</li></ol>

The authors have nothing to disclose.

A technique for microdissection of discrete, OTR-rich brain nuclei in the neonatal rat brain is presented in this paper. It is well recognized that neurons are highly specialized, even within well-characterized nuclei in the brain. This highly reproducible approach to isolate specific OTR-rich nuclei enables robust hypothesis testing. Using automated Western blotting, the consistency and reproducibility of the results were further improved. While a limitation of this technique remains modest brain punch variability; this...

In contrast to our understanding of early brain development occurring over the course of days-to-weeks postpartum, relatively little is known about the myriad of dynamic changes occurring in the first hours of life in rats. A key challenge has been the small size of the neonatal rat brain and a requirement for high-tech tools to isolate discrete brain regions or single cells. Studies often assess gene transcription and not translation1,2, which does not give a firm understanding of functional levels of activated signaling molecules. Others examine expression using immunohistochemistry to reference brain regions, which does not allow for the quantification of expression levels3. No study to date has examined the activation of signaling pathways associated with rats&#39; first colostrum feed in discrete brain regions, which requires rapid isolation and sacrifice and measurement of protein expression and protein phosphorylation using Western blotting. While brain microdissection is performed on older and larger brains, we have not identified a reference performing a non-single-cell brain punch in a P0 brain. This paper presents a protocol for isolating restricted regions of the neonatal brain using a relatively low-tech punch technique and a Western blotting procedure to measure protein expression in relatively small samples. This protocol may be suitable for research questions that require the assessment of protein expression and post-translational modifications (e.g., phosphorylation) in relatively restricted regions of small brains of any species, provided that the user can visually identify the brain region of interest with an atlas and identifiable landmarks.
This technique was developed to understand changes occurring in the brain as a result of the neonatal rats&#39; first colostrum feed, which is rich in oxytocin (OT). OT has been long known for its ability to stimulate milk let-down and uterine contraction. However, OT is now known to play a wide range of roles in the regulation of many bodily functions and behaviors4. For example, OT opposes stress and inflammation in conjunction with adaptive affiliative behaviors5, delays gastric emptying, and slows intestinal transit. OT receptors (OTR) have been identified in enteric neurons and intestinal epithelium6,7,8. The gastrointestinal effects of OT are particularly important to the infant during the early postnatal period. For instance, breastfeeding is associated with the delivery of significant quantities of OT to the neonatal gut9,10, and data show that the OTR is heavily overexpressed in duodenal villi during the milk suckling period8.
In vitro experiments using a gut cell line have demonstrated at the cellular level that oxytocin modulates important molecules in the stress signaling pathway11,12 and plays a regulatory role in translation of proteins12. These studies suggest that components of milk, including exogenous oxytocin from the mother, are important in the unfolded protein response in neonates to reduce cellular stress13.
In vivo and ex vivo studies have shown that colostrum OT modulates the cellular stress response, inflammation, and autophagy markers in newborn rat gut villi. Newborn enterocytes suffer substantial cellular stress on their luminal side when the gut is simultaneously exposed to microbiota from the mother in colostrum14,15 and numerous proteins, including hormones such as OT9,10,16.
The effects of OT on the brain have been studied17. However, the OT signaling mechanisms demonstrated in the gut during the early postnatal period have not been studied in the brain. In this paper, a method for isolating discrete brain nuclei in the neonatal rat brainstem and hypothalamus using electrophoresis is used to profile isolated brain regions. The overall goal of this method is to capture the state of cell signaling in brain areas as close as possible to birth, before and after the first milk suckling, in brain tissue with the lowest glial/neuronal index. The rationale for the development of this technique is that it allows for the rapid isolation of restricted, microscopic brain regions in neonatal pups with a more homogenous collection of neurons for ex vivo studies using an automated Western blotting methodology, offering highly consistent results on relatively small dissected samples. A shortcoming of prior work includes more gross dissection (brain slices or whole brain) and older animals18,19. The brains of young pups are incredibly dynamic, featuring waves of glial differentiation after birth. In order to study brain changes influenced by the pups&#39; first feeding, studying restricted neuronal nuclei with reproducible dissection is necessary.
Milk feed is usually analyzed for its immunological and nutritional impact on health or gene expression (for example, in enterocytes20,21), whereas its effect on brain areas during brain development is rarely studied. The effect of milk transit in the gut on brain function was analyzed in reference to gut cholecystokinin receptors vagal relay to brain stem nuclei, but not to intracellular signaling pathways22. There is a vast literature on vulnerability of the developing neonate brain to malnutrition of mothers during pregnancy23, but the stress and inflammation signals are not addressed. Importantly, the current method takes advantage of a phenomenon in day-zero rat newborns that isolates the blood-born colostrum stimuli from vagal relay of visceral stimuli. This is the so-called stress hypo-responsiveness period characterized by immature nucleus tractus solitarius (NTS)-hypothalamic circuit immediately after birth24,25 that restricts NTS, paraventricular nucleus (PVN), and supraoptic nucleus (SON) signals to blood-born stimuli.
This method is useful for analysis of multiple signaling pathways and relatively restricted to neuronal cells, provided that brain tissue is harvested at postnatal day-0 in rats, in addition to whether mothers have been challenged or not by any kind of treatment during pregnancy. Litters can be analyzed for the effects of colostrum feed versus pre-feeding signaling. When comparing signals between brain areas with poor versus rich protein yield, this method enables in-capillary determination of total protein of the polypeptide bands in capillaries run parallel to immune-quantitation of protein antigens. This method enables the quantitative comparison, using arbitrary units, of results obtained by the same antibody without standard quantitative curves and by reference to total protein per capillary. Comparing results obtained by different antibodies is possible only using quantitative standard curves.
This method allowed for the assessment of bidirectional signaling occurring between the gut and the brain and that can impact function in both organs26. The association between oxytocin and food intake, which has been extensively studied in recent years27, supports a link between increased oxytocin signaling and nutrient availability. These studies also support the converse concept that energy deficits are coupled with reductions in hypothalamic oxytocin signaling.
Earlier studies of the effect of OT on brain activity demonstrated that induced gut inflammation elicited cFos transcription in hypothalamic PVN, amygdala, and piriform cortex which was refractory to vagotomy28. However, systemic infusion of OT with secretin decreased the brain cFos response to the provoked inflammatory reaction in the gut28. This suggested that the effect of exogenous OT was carried out by routes other than vagal relays, possibly via blood-borne signaling molecules carried through the area postrema6,29.
In this study, the cellular stress signaling pathways that have previously observed in the gut were assessed in the brain. The hypothesis was that milk components may protect or defer the effect of inflammation on gut permeability to microbial and other metabolites, and in turn, the effects on brain function. The clear antagonistic differences in IkB versus BiP signaling found in villi, before and after priming by colostrum13, suggested that the brains of neonates, still in the process of developing, may sense these colostrum-induced gut signals.
Signaling protein markers used in previous gut experiments that are associated with endoplasmic reticulum stress were measured. They include the ER chaperone BiP, translation initiation factor eIF2a (which serves as a stress response integrator30), eIF2a kinase p-PKR, and two inflammation-signaling proteins (NF-kB and its inhibitor, IkB).
Six brain regions based on their ability in adults to secrete or respond to OT were chosen. The NTS, located at the upper medulla, is the first relay of the visceral input and receives direct signaling from vagal sensory neurons in the gut31 and possibly blood-born cytokines, toxins, and hormones via the adjacent area-postrema32. The PVN, supraoptic nucleus (SON), striatum nuclei (STR), cerebral cortex (CX), and medial preoptic nucleus (MPO) receive signaling from the gut via the NTS.
Results showed that the cellular stress response during the immediate postnatal period prior to colostrum priming and immediately after first feeding is different in NTS compared to PVN and SON. Signaling in CX, STR, and MPO differed from that of PVN and SON, as well. The distinct protective functions of OT shown previously to modulate cell stress and inflammation in the gut are likely sensed by some areas of the brain. Collectively, the data indicate that at the cellular level, during the first hours after birth, the brain responds to the metabolic stress associated with nutrient insufficiency. The data also show that the extent and direction of the modulating effects of the colostrum feed are region-dependent and that in some regions, they mirror OT effects shown previously in the gut.

<table>
	<tbody>
		<tr>
			<td>Bradford solution</td>
			<td>Bio Rad</td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Protein lysis kit</td>
			<td>Protein simple</td>
			<td>CBS403</td>
			<td>Bicine/CHAPS</td>
		</tr>
		<tr>
			<td>WES kits</td>
			<td>Protein simple</td>
			<td>WES-Mouse 12-230 master kit (PS-MK15), WES-Rabbit 12-230 master kit (PS-MK14), WES 12-230 kDa total Protein master kit (PS-TP07)</td>
			<td></td>
		</tr>
		<tr>
			<td>anti-mouse IgG HRP conjugate</td>
			<td>Protein simple</td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Rabbit anti-phospho-eIF2a</td>
			<td>Cell Signaling technology</td>
			<td>SER51, 9721</td>
			<td></td>
		</tr>
		<tr>
			<td>mouse mAb anti-PKR</td>
			<td>Cell Signaling technology</td>
			<td>2103</td>
			<td></td>
		</tr>
		<tr>
			<td>Rabbit anti-phospho-PKR</td>
			<td>Millipore</td>
			<td>Thr451, 07-886</td>
			<td></td>
		</tr>
		<tr>
			<td>Rabbit mAb anti-PKR</td>
			<td>Cell Signaling technology</td>
			<td>12297</td>
			<td></td>
		</tr>
		<tr>
			<td>rabbit mAb anti-GAPDH</td>
			<td>Cell Signaling technology</td>
			<td>2118</td>
			<td></td>
		</tr>
		<tr>
			<td>mouse mAb anti-phospho-IKB</td>
			<td>Cell Signaling technology</td>
			<td>9246</td>
			<td></td>
		</tr>
		<tr>
			<td>mouse mAb anti-IKB</td>
			<td>Cell Signaling technology</td>
			<td>4814</td>
			<td></td>
		</tr>
		<tr>
			<td>rabbit anti-BiP</td>
			<td>Cell Signaling technology</td>
			<td>3183</td>
			<td></td>
		</tr>
		<tr>
			<td>Rabbit anti GCN2</td>
			<td>Cell Signaling technology</td>
			<td>3302</td>
			<td></td>
		</tr>
		<tr>
			<td>Rabbit mAb anti-phospho-GCN2</td>
			<td>BIORBYT</td>
			<td>T899</td>
			<td></td>
		</tr>
		<tr>
			<td>pregnant Sprague-Dawley rats</td>
			<td>Charles River Laboratories</td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Punch device</td>
			<td>WellTech Rapid Core or Harris Uni-Core</td>
			<td>0.35, 0.50, 0.75, 1.0, 1.20, 1.50</td>
			<td></td>
		</tr>
	</tbody>
</table>

assessing cellular stress and inflammation in discrete oxytocin-secreting brain nuclei in the neonatal rat before and after first colostrum feeding

The goal of this protocol is to isolate oxytocin-receptor rich brain nuclei in the neonatal brain before and after first colostrum feeding. The expression of proteins known to respond to metabolic stress was measured in brain-nuclei isolates using Western blotting. This was done to assess whether metabolic stress-induced nutrient insufficiency in the body triggered neuronal stress. We have previously demonstrated that nutrient insufficiency in neonates elicits metabolic stress in the gut. Furthermore, colostrum oxytocin modulates cellular stress response, inflammation, and autophagy markers in newborn rat gut villi prior to and after first feed. Signaling protein markers associated with the endoplasmic reticulum stress [ER chaperone binding immunoglobulin protein (BiP), eukaryotic translation initiation factor 2A (eIF2a), and eIF2a kinase protein kinase R (p-PKR)], as well as two inflammation-signaling proteins [nuclear factor-&#954;B (NF-kB) and inhibitor &#954;B (IkB)], were measured in newborn brain nuclei [nucleus of the solitary tract (NTS), paraventricular nucleus (PVN), supra-optic nucleus (SON), cortex (CX), striatum nuclei (STR), and medial preoptic nucleus (MPO)] before the first feed (unprimed by colostrum) and after the start of nursing (primed by colostrum). Expression of BiP/GRP78 and p-eIF2a were upregulated in unprimed and downregulated in primed NTS tissue. NF-kB was retained (high) in the CX, STR, and MPO cytoplasm, whereas NF-kB was lower and unchanged in NTS, PVN, and SON in both conditions. The collective BiP and p-eIF2 findings are consistent with a stress response. eIf2a was phosphorylated by dsRNA dependent kinase (p-PKR) in the SON, CX, STR, and MPO. However, in the NTS (and to a lesser extent in PVN), eIf2a was phosphorylated by another kinase, general control nonderepressible-2 kinase (GCN2). The stress-modulating mechanisms previously observed in newborn gut enterocytes appear to be mirrored in some OTR-rich brain regions. The NTS and PVN may utilize a different phosphorylation mechanism (under nutrient deficiency) from other regions and be refractory to the impact of nutrient insufficiency. Collectively, this data suggests that brain responses to nutrient insufficiency stress are offset by signaling from colostrum-primed enterocytes.

The representative bands of immunoreactivity relative to total protein show that there are brain nuclei with very low harvested protein. This requires the use of the automated Western blot technique, which is highly sensitive compared to the canonical Western blot. This approach can be run with fortyfold less protein per capillary compared to the per-lane in Western blots.
Differential effects of colostrum priming on BiP levels in ...

Watch this Scientific Journal Video about Assessing Cellular Stress and Inflammation in Discrete Oxytocin-secreting Brain Nuclei in the Neonatal Rat Before and After First Colostrum Feeding at JoVE.co

Assessing Cellular Stress and Inflammation in Discrete Oxytocin-secreting Brain Nuclei in the Neonatal Rat Before and After First Colostrum Feeding

Here, we present a protocol to isolate brain nuclei in the neonatal rat brain in conjunction with first colostrum feeding. This technique allows the study of nutrient insufficiency stress in the brain as modulated by enterocyte signaling.

The goal of this protocol is to isolate oxytocin-receptor rich brain nuclei in the neonatal brain before and after first colostrum feeding. The expression ...

assessing-cellular-stress-inflammation-discrete-oxytocin-secreting

Universidad de Cartagena UDEC

Research

JoVE Journal

Immunology and Infection

7.8K Views.  Columbia University. Here, we present a protocol to isolate brain nuclei in the neonatal rat brain in conjunction with first colostrum feeding. This technique allows the study of nutrient insufficiency stress in the brain as modulated by enterocyte signaling.

Video: Assessing Cellular Stress and Inflammation in Discrete Oxytocin-secreting Brain Nuclei in the Neonatal Rat Before and After First Colostrum Feeding

Seven Steps to Stellate Cells

Hepatic stellate cells are liver-resident cells of star-like morphology and are located in the space of Disse between liver sinusoidal endothelial cells and hepatocytes1,2. Stellate cells are derived from bone marrow precursors and store up to 80% of the total body vitamin A1, 2. Upon activation, stellate cells differentiate into myofibroblasts to produce extracellular matrix, thus contributing to liver fibrosis3. Based on their ability to contract, myofibroblastic stellate cells can regulate the vascular tone associated with portal hypertension4. Recently, we demonstrated that hepatic stellate cells are potent antigen presenting cells and can activate NKT cells as well as conventional T lymphocytes5. 

 Here we present a method for the efficient preparation of hepatic stellate cells from mouse liver. Due to their perisinusoidal localization, the isolation of hepatic stellate cells is a multi-step process. In order to render stellate cells accessible to isolation from the space of Disse, mouse livers are perfused in situ with the digestive enzymes Pronase E and Collagenase P. Following perfusion, the liver tissue is subjected to additional enzymatic treatment with Pronase E and Collagenase P in vitro. Subsequently, the method takes advantage of the massive amount of vitamin A-storing lipid droplets in hepatic stellate cells. This feature allows the separation of stellate cells from other hepatic cell types by centrifugation on an 8% Nycodenz gradient. The protocol described here yields a highly pure and homogenous population of stellate cells. Purity of preparations can be assessed by staining for the marker molecule glial fibrillary acidic protein (GFAP), prior to analysis by fluorescence microscopy or flow cytometry. Further, light microscopy reveals the unique appearance of star-shaped hepatic stellate cells that harbor high amounts of lipid droplets. 


 Taken together, we present a detailed protocol for the efficient isolation of hepatic stellate cells, including representative images of their morphological appearance and GFAP expression that help to define the stellate cell entity.

Here we describe a method for the isolation of hepatic stellate cells from mouse liver. For stellate cell purification, mouse livers are digested in situ and in vitro by pronase-collagenase treatment prior to density gradient centrifugation. This technique yields highly pure hepatic stellate cells.

Hepatic stellate cells are liver-resident  cells of star-like morphology and are located in the space of Disse between  liver sinusoidal endothelial cells ...

Trichuris muris Infection: A Model of Type 2 Immunity and Inflammation in the Gut

Trichuris muris is a natural pathogen of mice and is biologically and antigenically similar to species of Trichuris that 
infect humans and livestock1. Infective eggs are given by oral gavage, hatch in the distal small intestine, invade the intestinal epithelial cells (IECs) 
that line the crypts of the cecum and proximal colon and upon maturation the worms release eggs into the environment1. This model is a powerful tool to 
examine factors that control CD4+ T helper (Th) cell activation as well as changes in the intestinal epithelium. The immune response that occurs in 
resistant inbred strains, such as C57BL/6 and BALB/c, is characterized by Th2 polarized cytokines (IL-4, IL-5 and IL-13) and expulsion of worms while Th1-associated 
cytokines (IL-12, IL-18, IFN-&gamma;) promote chronic infections in genetically susceptible AKR/J mice2-6. Th2 cytokines promote physiological changes in 
the intestinal microenvironment including rapid turnover of IECs, goblet cell differentiation, recruitment and changes in epithelial permeability and smooth muscle 
contraction, all of which have been implicated in worm expulsion7-15. Here we detail a protocol for propagating Trichuris muris eggs which can 
be used in subsequent experiments. We also provide a sample experimental harvest with suggestions for post-infection analysis. Overall, this protocol will provide 
researchers with the basic tools to perform a Trichuris muris mouse infection model which can be used to address questions pertaining to Th proclivity in 
the gastrointestinal tract as well as immune effector functions of IECs.

Trichuris muris Infection: A Model of Type 2 Immunity and Inflammation in the Gut

Trichuris muris infection is an intestinal model of Th2 immunity where resistant mice generate a protective Th2 response and susceptible mice generate a pathological Th1 response.

Trichuris muris is a natural pathogen of mice and is biologically and antigenically similar to species of Trichuris that 
infect humans and livestock1. ...

Assessing Somatic Hypermutation in Ramos B Cells after Overexpression or Knockdown of Specific Genes

B cells start their life with low affinity antibodies generated by V(D)J recombination. However, upon detecting a pathogen, the variable (V) region of an immunoglobulin (Ig) gene is mutated approximately 100,000-fold more than the rest of the genome through somatic hypermutation (SHM), resulting in high affinity antibodies1,2. In addition, class switch recombination (CSR) produces antibodies with different effector functions depending on the kind of immune response that is needed for a particular pathogen. Both CSR and SHM are initiated by activation-induced cytidine deaminase (AID), which deaminates cytosine residues in DNA to produce uracils. These uracils are processed by error-prone forms of repair pathways, eventually leading to mutations and recombination1-3.
Our current understanding of the molecular details of SHM and CSR come from a combination of studies in mice, primary cells, cell lines, and cell-free experiments. Mouse models remain the gold standard with genetic knockouts showing critical roles for many repair factors (e.g. Ung, Msh2, Msh6, Exo1, and polymerase &eta;)4-10. However, not all genes are amenable for knockout studies. For example, knockouts of several double-strand break repair proteins are embryonically lethal or impair B-cell development11-14. Moreover, sometimes the specific function of a protein in SHM or CSR may be masked by more global defects caused by the knockout. In addition, since experiments in mice can be lengthy, altering expression of individual genes in cell lines has become an increasingly popular first step to identifying and characterizing candidate genes15-18.
Ramos &#x2013; a Burkitt lymphoma cell line that constitutively undergoes SHM &#x2013; has been a popular cell-line model to study SHM18-24. One advantage of Ramos cells is that they have a built-in convenient semi-quantitative measure of SHM. Wild type cells express IgM and, as they pick up mutations, some of the mutations knock out IgM expression. Therefore, assaying IgM loss by fluorescence-activated cell scanning (FACS) provides a quick read-out for the level of SHM. A more quantitative measurement of SHM can be obtained by directly sequencing the antibody genes. 
Since Ramos cells are difficult to transfect, we produce stable derivatives that have increased or lowered expression of an individual gene by infecting cells with retroviral or lentiviral constructs that contain either an overexpression cassette or a short hairpin RNA (shRNA), respectively. Here, we describe how we infect Ramos cells and then use these cells to investigate the role of specific genes on SHM (Figure 1).

We describe how to perform retroviral or lentiviral infections of overexpression or shRNA-containing constructs in the human Ramos B-cell line and how to measure somatic hypermutation in these cells.

B cells start their life with low affinity antibodies generated by V(D)J recombination.  However, upon detecting a pathogen, the variable (V) region of an ...

Primary Microglia Isolation from Mixed Glial Cell Cultures of Neonatal Rat Brain Tissue

Microglia account for approximately 12% of the total cellular population in the mammalian brain. While neurons and astrocytes are considered the major cell types of the nervous system, microglia play a significant role in normal brain physiology by monitoring tissue for debris and pathogens and maintaining homeostasis in the parenchyma via phagocytic activity 1,2. Microglia are activated during a number of injury and disease conditions, including neurodegenerative disease, traumatic brain injury, and nervous system infection 3. Under these activating conditions, microglia increase their phagocytic activity, undergo morpohological and proliferative change, and actively secrete reactive oxygen and nitrogen species, pro-inflammatory chemokines and cytokines, often activating a paracrine or autocrine loop 4-6. As these microglial responses contribute to disease pathogenesis in neurological conditions, research focused on microglia is warranted.
	Due to the cellular heterogeneity of the brain, it is technically difficult to obtain sufficient microglial sample material with high purity during in vivo experiments. Current research on the neuroprotective and neurotoxic functions of microglia require a routine technical method to consistently generate pure and healthy microglia with sufficient yield for study. We present, in text and video, a protocol to isolate pure primary microglia from mixed glia cultures for a variety of downstream applications. Briefly, this technique utilizes dissociated brain tissue from neonatal rat pups to produce mixed glial cell cultures. After the mixed glial cultures reach confluency, primary microglia are mechanically isolated from the culture by a brief duration of shaking. The microglia are then plated at high purity for experimental study.
	The principle and protocol of this methodology have been described in the literature 7,8. Additionally, alternate methodologies to isolate primary microglia are well described 9-12. Homogenized brain tissue may be separated by density gradient centrifugation to yield primary microglia 12. However, the centrifugation is of moderate length (45 min) and may cause cellular damage and activation, as well as, cause enriched microglia and other cellular populations. Another protocol has been utilized to isolate primary microglia in a variety of organisms by prolonged (16 hr) shaking while in culture 9-11. After shaking, the media supernatant is centrifuged to isolate microglia. This longer two-step isolation method may also perturb microglial function and activation. We chiefly utilize the following microglia isolation protocol in our laboratory for a number of reasons: (1) primary microglia simulate in vivo biology more faithfully than immortalized rodent microglia cell lines, (2) nominal mechanical disruption minimizes potential cellular dysfunction or activation, and (3) sufficient yield can be obtained without passage of the mixed glial cell cultures.
	It is important to note that this protocol uses brain tissue from neonatal rat pups to isolate microglia and that using older rats to isolate microglia can significantly impact the yield, activation status, and functional properties of isolated microglia. There is evidence that aging is linked with microglia dysfunction, increased neuroinflammation and neurodegenerative pathologies, so previous studies have used ex vivo adult microglia to better understand the role of microglia in neurodegenerative diseases where aging is important parameter. However, ex vivo microglia cannot be kept in culture for prolonged periods of time. Therefore, while this protocol extends the life of primary microglia in culture, it should be noted that the microglia behave differently from adult microglia and in vitro studies should be carefully considered when translated to an in vivo setting.

Isolating primary microglia from the cellular heterogeneity of the brain is essential to investigate their role in both physiological and pathological conditions. This protocol describes a mechanical isolation and mixed cell culture technique that provides high yield and high purity, viable primary microglial cells for in vitro study and downstream applications.

Microglia account for approximately 12% of the  total cellular population in the mammalian brain. While neurons and astrocytes are considered  the major ...

Culturing Microglia from the Neonatal and Adult Central Nervous System

Microglia are the resident macrophage-like cells of the central nervous system (CNS) and, as such, have critically important roles in physiological and pathological processes such as CNS maturation in development, multiple sclerosis, and spinal cord injury. Microglia can be activated and recruited to action by neuronal injury or stimulation, such as axonal damage seen in MS or ischemic brain trauma resulting from stroke. These immunocompetent members of the CNS are also thought to have roles in synaptic plasticity under non-pathological conditions. We employ protocols for culturing microglia from the neonatal and adult tissues that are aimed to maximize the viable cell numbers while minimizing confounding variables, such as the presence of other CNS cell types and cell culture debris. We utilize large and easily discernable CNS components (e.g. cortex, spinal cord segments), which makes the entire process feasible and reproducible. The use of adult cells is a suitable alternative to the use of neonatal brain microglia, as many pathologies studied mainly affect the postnatal spinal cord. These culture systems are also useful for directly testing the effect of compounds that may either inhibit or promote microglial activation. Since microglial activation can shape the outcomes of disease in the adult CNS, there is a need for in vitro systems in which neonatal and adult microglia can be cultured and studied.

We outline methods for the efficient and quick isolation/culture of viable microglia from the neonatal cerebral cortex and adult spinal cord. The dissection and plating of cortical microglia can be accomplished within 90 minutes, with the subsequent microglial harvest taking place ~ 10 days following the initial dissection.

Microglia are the resident macrophage-like cells of the central nervous system (CNS) and, as such, have critically important roles in physiological and ...

Non-Invasive Model of Neuropathogenic Escherichia coli Infection in the Neonatal Rat

Investigation of the interactions between animal host and bacterial pathogen is only meaningful if the infection model employed replicates the principal features of the natural infection. This protocol describes procedures for the establishment and evaluation of systemic infection due to neuropathogenic Escherichia coli K1 in the neonatal rat. Colonization of the gastrointestinal tract leads to dissemination of the pathogen along the gut-lymph-blood-brain course of infection and the model displays strong age dependency. A strain of E. coli O18:K1 with enhanced virulence for the neonatal rat produces exceptionally high rates of colonization, translocation to the blood compartment and invasion of the meninges following transit through the choroid plexus. As in the human host, penetration of the central nervous system is accompanied by local inflammation and an invariably lethal outcome. The model is of proven utility for studies of the mechanism of pathogenesis, for evaluation of therapeutic interventions and for assessment of bacterial virulence.

Non-Invasive Model of Neuropathogenic Escherichia coli Infection in the Neonatal Rat

Here, a procedure is described for the establishment of systemic infection in the neonatal rat with cultures of Escherichia coli K1. This non-invasive procedure permits colonization of the gastrointestinal tract, translocation of the pathogen to the systemic circulation, and invasion of the central nervous system at the choroid plexus.

Investigation of the interactions between animal host and bacterial pathogen is only meaningful if the infection model employed replicates the principal ...

Induction of Murine Intestinal Inflammation by Adoptive Transfer of Effector CD4+CD45RBhigh T Cells into Immunodeficient Mice

There are many different animal models available for studying the pathogenesis of human inflammatory bowel diseases (IBD), each with its own advantages and disadvantages. We describe here an experimental colitis model that is initiated by adoptive transfer of syngeneic splenic CD4+CD45RBhigh T cells into T and B cell deficient recipient mice. The CD4+CD45RBhigh T cell population that largely consists of na&#239;ve effector cells is capable of inducing chronic intestinal inflammation, closely resembling key aspects of human IBD. This method can be manipulated to study aspects of disease onset and progression. Additionally it can be used to study the function of innate, adaptive, and regulatory immune cell populations, and the role of environmental exposures, i.e., the microbiota, in intestinal inflammation. In this article we illustrate the methodology for inducing colitis with a step-by-step protocol. This includes a video demonstration of key technical aspects required to successfully develop this murine model of experimental colitis for research purposes.

Induction of Murine Intestinal Inflammation by Adoptive Transfer of Effector CD4+CD45RBhigh T Cells into Immunodeficient Mice

Here, we present a protocol to induce colonic inflammation in mice by adoptive transfer of syngeneic CD4+CD45RBhigh T cells into T and B cell deficient recipients. Clinical and histopathological features mimic human inflammatory bowel diseases. This method allows the study of the initiation of colonic inflammation and progression of disease.

There are many different animal models available for studying the pathogenesis of human inflammatory bowel diseases (IBD), each with its own advantages ...

Immunofluorescence Analysis of Stress Granule Formation After Bacterial Challenge of Mammalian Cells

Fluorescent imaging of cellular components is an effective tool to investigate host-pathogen interactions. Pathogens can affect many different features of infected cells, including organelle ultrastructure, cytoskeletal network organization, as well as cellular processes such as Stress Granule (SG) formation. The characterization of how pathogens subvert host processes is an important and integral part of the field of pathogenesis. While variable phenotypes may be readily visible, the precise analysis of the qualitative and quantitative differences in the cellular structures induced by pathogen challenge is essential for defining statistically significant differences between experimental and control samples. SG formation is an evolutionarily conserved stress response that leads to antiviral responses and has long been investigated using viral infections1. SG formation also affects signaling cascades and may have other still unknown consequences2. The characterization of this stress response to pathogens other than viruses, such as bacterial pathogens, is currently an emerging area of research3. For now, quantitative and qualitative analysis of SG formation is not yet routinely used, even in the viral systems. Here we describe a simple method for inducing and characterizing SG formation in uninfected cells and in cells infected with a cytosolic bacterial pathogen, which affects the formation of SGs in response to various exogenous stresses. Analysis of SG formation and composition is achieved by using a number of different SG markers and the spot detector plug-in of ICY, an open source image analysis tool.

We describe a method for the qualitative and quantitative analysis of stress granule formation in mammalian cells after the cells are challenged with bacteria and a number of different stresses. This protocol can be applied to investigate the cellular stress granule response in a wide range of host-bacterial interactions.

Fluorescent imaging of cellular components is an effective tool to investigate host-pathogen interactions. Pathogens can affect many different features of ...

Isolation of Salmonella typhimurium-containing Phagosomes from Macrophages

Salmonella typhimurium is a facultative intracellular bacterium that causes gastroenteritis in humans. After invasion of the lamina propria, S. typhimurium bacteria are quickly detected and phagocytized by macrophages, and contained in vesicles known as phagosomes in order to be degraded. Isolation of S. typhimurium-containing phagosomes have been widely used to study how S. typhimurium infection alters the process of phagosome maturation to prevent bacterial degradation. Classically, the isolation of bacteria-containing phagosomes has been performed by sucrose gradient centrifugation. However, this process is time-consuming, and requires specialized equipment and a certain degree of dexterity. Described here is a simple and quick method for the isolation of S. typhimurium-containing phagosomes from macrophages by coating the bacteria with biotin-streptavidin-conjugated magnetic beads. Phagosomes obtained by this method can be suspended in any buffer of choice, allowing the utilization of isolated phagosomes for a broad range of assays, such as protein, metabolite, and lipid analysis. In summary, this method for the isolation of S. typhimurium-containing phagosomes is specific, efficient, rapid, requires minimum equipment, and is more versatile than the classical method of isolation by sucrose gradient-ultracentrifugation.

Isolation of Salmonella typhimurium-containing Phagosomes from Macrophages

We describe here a simple and quick method for the isolation of Salmonella typhimurium-containing phagosomes from macrophages by coating the bacteria with biotin and streptavidin.

Salmonella typhimurium is a facultative intracellular bacterium that causes gastroenteritis in humans. After invasion of the lamina propria, S. ...

Long-term In Vivo Tracking of Inflammatory Cell Dynamics Within Drosophila Pupae

During the rapid inflammatory response to tissue damage, cells of the innate immune system are quickly recruited to the injury site. Once at the wound, innate immune cells perform a number of essential functions, such as fighting infection, clearing necrotic debris, and stimulating matrix deposition. In order to fully understand the diverse signaling events that regulate this immune response, it is crucial to observe the complex behaviors of (and interactions that occur between) multiple cell lineages in vivo, and in real-time, with the high spatio-temporal resolution. The optical translucency and the genetic tractability of Drosophila embryos have established Drosophila as an invaluable model to live-image and dissect fundamental aspects of inflammatory cell behavior, including mechanisms of developmental dispersal, clearance of apoptotic corpses&#160;and/or microbial pathogens, and recruitment to wounds. However, more recent work has now demonstrated that employing a much later stage in the Drosophila lifecycle &#8211; the Drosophila pupa &#8211; offers a number of distinct advantages, including improved RNAi efficiency, longer imaging periods, and significantly greater immune cell numbers. Here we describe a protocol for imaging wound repair and the associated inflammatory response at the high spatio-temporal resolution in live Drosophila pupae. To follow the dynamics of both re-epithelialization and inflammation, we use a number of specific in vivo fluorescent markers for both the epithelium and innate immune cells. We also demonstrate the effectiveness of photo-convertible fluorophores, such as Kaede, for following the specific immune cell subsets, to track their behavior as they migrate to, and resolve from, the injury site.

Long-term In Vivo Tracking of Inflammatory Cell Dynamics Within Drosophila Pupae

Here we present a protocol for live-imaging wound repair and the associated inflammatory response at high spatio-temporal resolution in vivo. This method utilizes the pupal stage of Drosophila development to enable long-term imaging and tracking of specific cell populations over time and is compatible with efficient RNAi-mediated gene inactivation.

During the rapid inflammatory response to tissue damage, cells of the innate immune system are quickly recruited to the injury site. Once at the wound, ...

Assessing Cellular Stress and Inflammation in Discrete Oxytocin-secreting Brain Nuclei in the Neonatal Rat Before and After First Colostrum Feeding

Summary

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Chapters in this video

Seven Steps to Stellate Cells

Trichuris muris Infection: A Model of Type 2 Immunity and Inflammation in the Gut

Assessing Somatic Hypermutation in Ramos B Cells after Overexpression or Knockdown of Specific Genes

Primary Microglia Isolation from Mixed Glial Cell Cultures of Neonatal Rat Brain Tissue

Culturing Microglia from the Neonatal and Adult Central Nervous System

Non-Invasive Model of Neuropathogenic Escherichia coli Infection in the Neonatal Rat

Induction of Murine Intestinal Inflammation by Adoptive Transfer of Effector CD4⁺CD45RB^high T Cells into Immunodeficient Mice

Immunofluorescence Analysis of Stress Granule Formation After Bacterial Challenge of Mammalian Cells

Isolation of Salmonella typhimurium-containing Phagosomes from Macrophages

Long-term In Vivo Tracking of Inflammatory Cell Dynamics Within Drosophila Pupae