We would like to thank Alex Hitchen and Meg Booth for their help with the mating trials. This work was supported by NERC grant NE/H015604/1 to TP.

1. Preparation of Fly Food with Food Coloring
<ol>
	<li>Take a standard Drosophila vial with approximately 20 ml of food in the bottom (Figure 1). Use the following recipe for food mix using 1 L of boiling water: 10 g of agar, 85 g of dextrose, 60 g of maize flour, 40 g of yeast, and stir for 5 min&#160;of simmering. Add 25 ml of 10% nipagen once the mixture has cooled to 75 &#176;C.</li>
	<li>After the food has cooled and solidified add two drops (approximately 0.5 - 1 ml) of blue food coloring to the top of the food and spread over the whole surface of the vial (Figure 1). Use a different color dye if preferred.</li>
	<li>Leave the food for two days in the fridge so that the dye is absorbed by the top layer of food; this avoids excessive moisture damaging the flies during the maturation period. Add a small piece of tissue paper if excessive moisture is still a problem to blot up extra moisture and then subsequently remove it.</li>
	<li>Transfer flies onto the food either individually or in groups. 
	Note: Flies will gain intestinal staining within 1 day of being placed on the food. Alternatively, fully mature the flies on the dyed food prior to the experiment (increased mortality during the maturation period was not observed from exposure to food dye).</li>
	<li>Check that the dyed flies can be easily distinguished from the non-dyed flies. If they cannot be distinguished, repeat steps 1.1 - 1.4 using either a higher concentration of dye, or a different dye.</li>
</ol>
2. Two Male Mating Trials Using Food Coloring
<ol>
	<li>For producing progeny, set up multiple vials containing pairs of female and male flies (small groups of males and females are also suitable, although take care to avoid crowding of larvae). Allow the females to lay eggs and move the flies to new vials every 5 - 7 days. Store vials at a suitable temperature for the species of interest (22 &#176;C for D. pseudoobscura and D. subobscura and 25 &#176;C for D. melanogaster).</li>
	<li>Before collecting experimental flies remove all flies from the collecting vials at a set time before collecting males and females to ensure they will be virgins (D. melanogaster&#160;&#8211; 6 hr at 25 &#176;C, D. pseudoobscura&#160;&#8211; 18 hr at 22 &#176;C, and D. subobscura&#160;&#8211; 24 hr at 22 &#176;C). 
	Note: If flies are not virgin this will bias their behavior in mating trials15.
	<ol>
		<li>Store and mature male individually in standard 75 x 20 mm plastic vials (containing ~ 20 ml of food). This avoids the negative impacts on male mating behavior and fitness seen in some species when males are kept in groups16.</li>
		<li>Expose half of the males to the desired treatment (CO2 anaesthesia in this case). Use a CO2 mat or tap to expose the flies for the required time. Store half of the males in each treatment on colored food until the mating takes place. This will make them visually distinguishable during the mating trials.</li>
		<li>For transferring flies use an aspirator17. Label each vial to identify both the treatment and the color status of the male. Here, use four treatments (anaesthesia, non-colored = G-NC, anaesthesia, colored = G-C, no anaesthesia, non-colored, NG-NC, and no anaesthesia, colored, NG-C).</li>
	</ol>
	</li>
	<li>Transfer newly emerged females into fresh food vials to mature as groups of 10.</li>
	<li>Allow flies to mature to the mating age (D. melanogaster&#160;&#8211; 3 days, D. pseudoobscura&#160;&#8211; 5 days, D. subobscura&#160;&#8211;&#160;7 days18. Store flies at a suitable temperature for the species being studied (e.g., 22 &#176;C for D. pseudoobscura and D. subobscura and 25 &#176;C for D. melanogaster).</li>
	<li>Move females to individual vials (containing ~ 20 ml of food) 1 day before the mating trial for acclimatization to the mating vial. Label these vials so that vials can be differentiated. Be careful to blind the experiment by using neutral labelling (i.e., 1 - 150) so it is not possible to guess the identity of the flies in any vial. 
	Note: The person who places the flies into each vial will have to know the identity of the flies placed in each vial as they will note which treatment was stained. However, the observer who watches the mating should not know their identity. To do this at least two experimenters will be needed, one to set up and one to observe.</li>
	<li>Begin the mating trials between 10 - 12 A.M., or at a time that coincides with the light coming on in the light/dark cycle the flies are exposed to (&#8220;dawn&#8221; for the flies). Add two male flies to each mating vial (containing a single female fly) using an aspirator. Ensure that the two males are from different treatments (anaesthesia or control) and that one has intestinal staining to make it possible to differentiate them from each other, and note which male is stained.</li>
	<li>If copulation occurs, record the status of the male that mates (either colored or non - colored). If trials last for 2 hr, assume the female will not mate. 
	Note: 2 hr is suitable for these species, but other Drosophila may need more or less time.</li>
</ol>
3. Single Male Mating Trials
<ol>
	<li>For single male trials, repeat Protocol 2 with two changes:
	<ol>
		<li>In step 2.3 do not keep males on colored food.</li>
		<li>In step 2.7, add only a single male to each vial.</li>
	</ol>
	</li>
	<li>In step 2.8, record the time the fly is added to the vial, the time the mating starts and the time the mating finished should be recorded. From these values, calculate mating success, latency, and duration.</li>
</ol>
4. Data Analysis
<ol>
	<li>Use suitable statistics package for analysis. If the data are normal and only have two treatments, use t-tests or equivalent Generalized Linear Model (GLM). For two male experiments, use binomial tests or a binomial GLM that are available in any basic statistics package. 
	Note: For the example data, all analyses were carried out in R version 3.0.319.</li>
	<li>Check the mating latency and mating duration data for normality, by plotting frequency histograms of latency and duration for each treatment20, and using a test for normality such as Shapiro-Wilk. If it is not normal, transform it, or use non-parametric equivalent statistics20. 
	Note: For the example data from the single male experiments log transformation met the requirements of normality and equal variances.</li>
	<li>If the data can be normalized, use t-tests to examine differences between mating latency and duration in the single male mating trials when using two treatments21. If multiple treatments are used, try an Analysis Of Variance (ANOVA)20. If the data cannot be normalized, try equivalent non-parametric tests21.</li>
	<li>Use binomial tests to test for an effect of either food coloring or CO2 anaesthesia on the mating success of competing males20. If multiple treatments are used, as is the case with the example data, use a GLM with binomial error structure21.</li>
	<li>For the two male trials in the example data, use GLMs with binomial error structures. One GLM examined color as a response variable (colored = 0 and non-colored&#160;= 1) with species, gas status, and gas treatment fitted as explanatory variables.One GLM examined CO2 as a response variable (gassed = 0 and not-gassed = 1) with species, color status, and gas treatment fitted. In each case, produce the maximal model, and perform model simplification based upon AIC20.</li>
</ol>

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The authors declare that they have no competing financial interests.

This data shows that the impact of CO2 anaesthesia is inconsistent between species, with two of three species showing little impact. Our results suggest labelling with food dye had a lower impact on male mating success than CO2 anaesthesia for D. melanogaster. These experiments demonstrate that food dyes can easily and cheaply be used to label flies for mating assays involving multiple males.
Of the three model Drosophila species examined, only D. melanogaster showed an effect of CO2 anaesthesia on mating performance in a competitive situation. In contrast, none of the species showed an effect of collection on gas in single mating trials in terms of mating latency, contrary to previous results for D. melanogaster5. The effect of competition could therefore be highlighting more subtle fitness effects of CO2 anaesthesia, which are only detectable under situations where there is male-male competition. Exposure at early collection and one day prior to the trial have a negative effect on the ability of males of D. melanogaster to gain a mating. Exposure two days prior to the trial however did not show any effect. Both D. pseudoobscura and D. subobscura did not show any effect of exposure to gas in any of the trials. One explanation is that D. melanogaster was vulnerable to early exposure to CO2 because it must be collected earlier in life (0 - 6 hr old) than the other species to ensure males are virgin. Hence male D. melanogaster of this age may be more sensitive as the cuticle of the fly is still hardening, compared to the other species which have had longer for their cuticle to harden. In general, this supports the idea that the effects of CO2 anaesthesia are species specific and investigators should appropriately test the effect in their target species. Currently, the majority of work on the effect of CO2 anaesthesia has been carried out on Drosophila melanogaster5,11,22 and therefore may not be appropriate to apply to other related species.
The alternative non-invasive method presented to differentiate flies is food dye. Results suggest this treatment had no effect in across all the species examined. However, while its use was successful in providing a cheap and easily visible marker for distinguishing between individuals it should be noted that the dye was easier to distinguish in D. pseudoobscura and D. subobscura than in D. melanogaster. Previous authors have used several colors (red, green and blue)4,6. We found blue coloring to be the easiest to distinguish in all species, particularly D. pseudoobscura and D. subobscura. Using several colors would potentially allow more complex experiments with many individually marked flies. However, preliminary tests of different dyes are essential, as some food dyes fail to color the flies, possibly being digested when consumed. Other dyes can have toxic effects and reduce survival of the flies, and should be avoided14). Alternative food coloring methods using more expensive stains have also been used for examining intestinal integrity for D. melanogaster23. These may provide an alternative, although more expensive, dyeing method23.
The dye method is as quick as CO2 wing clipping as flies can be stored on dyed food from collection. Uptake of the food was rapid (~ 3 hr), so storage O/N on colored food would also be sufficient to mark flies, as used in other studies6. However, the duration of the coloring is relatively short (~ 4 - 5 hr) compared to wing clipping (permanent) or fluorescent dust marking (10 - 12 days)24. As Drosophila species vary in appearance, different dyes will be more or less effective for different species, and as some strains (e.g., knock-out mutants) can be vulnerable to changes in diet, any use of dye requires a preliminary test of its effectiveness particularly if longer term exposure to dyes can be toxic14. In contrast to the study by Kalaw et al.14, we found no significant mortality after storage for multiple days on colored foods for D. melanogaster (3 days), D. pseudoobscura (5 days), or D. subobscura (7 days), probably due to the difference in dye used.
The critical step for successful use of the dye technique is step 1.5, validating that the chosen dye works well with the species and strain being used. An alternative technique involves applying colored dust to the outside of the fly prior to use in field experiments24. This method has been used for tracking individuals in the field due to the duration of marking and the ease of mass marking flies24. Although we have not explicitly tested this method in mating trials, it would be important to examine any effects that dust could have on the senses important in mating, particularly in Drosophila25, 26. In species, however, where intestinal dyeing is not possible, these methods could be suitable.
In conclusion we found that in two of the three species tested (D. pseudoobscura and D. subobscura) there was no effect found of either CO2 anaesthesia or food coloring on mating ability of males. For D. melanogaster a negative effect of CO2 anaesthesia was detected, but food coloring did not affect mating success in this species. Overall, the dye method provides a simple and cheap non-invasive method for identifying individual Drosophila that is equivalent or better than methods that require CO2 anaesthesia. It is likely this method would work across a range of species.

Over the last few decades there has been increasing interest in how sexual selection and competition between males impact on evolution1,2. Experiments on mating behavior have played an important role in developing and testing theories of sexual selection3,4. In particular, research using species of the genus Drosophila, has contributed greatly to the understanding of sexual selection and behavior. However, it is important to investigate whether commonly used techniques might artificially bias the results of standard mating experiments5,6.
Anaesthesia is often used for handling and identification in experiments7. For example, flies are commonly collected before mating, or sorted into genotypes or experimental treatments using carbon dioxide (CO2) anaesthetic. In experiments where two or more individuals need to be distinguished, it is common practice to anaesthetise the flies and clip part of the wing off to identify each individual or treatment group5,8. It is vital, however, to understand how CO2 treatment will affect behavior. The effect of CO2 anaesthesia has been examined in Drosophilamelanogaster in which males exposed to CO2 took significantly longer to mate and overall had lower mating success than non-anaesthetized males or males anaesthetized using exposure to cold5. This effect was observed both when anaesthesia was applied on the day of the experiment and when flies were given one day to recover. However, this study was limited in only examining trials where a single male was presented to each female5. A more realistic scenario is for a female to encounter multiple males9,10, allowing competition between males, which might allow the detection of more subtle losses of male fitness due to anaesthesia. The use of CO2 anaesthesia has also been found to reduce fecundity and longevity of adult D. melanogaster when they are exposed shortly after eclosion, as is common when collecting virgin flies11.
An alternative to CO2 anaesthesia is to mark flies by feeding them food colored with dye4,6,10,12,13. This dye enters the intestines of the fly and is visible through the abdomen, allowing colored flies to be distinguished from uncolored flies, or from flies labelled with a different color. Methods differ in how this can be applied: being added directly to the food12, via dyed supplementary yeast paste6, or via exposure to a novel dyed food substrate13. These marking techniques appear to show no effect on mating performance4,6. However, a paper directly examining the effects of the same food coloring on adult D. melanogaster found a strong reduction in lifespan14. Previous work has also focused almost entirely on D. melanogaster, both with regard to the effects of CO2 anaesthesia5,11 and food coloring14 methods. Currently, there is little information on how CO2&#160;anaesthesia or the use of intestinal coloring affects the mating behavior of other Drosophila.
The following study evaluates the effect of CO2 anaesthesia on the mating behavior of three species of Drosophila (D. melanogaster, D. pseudoobscura, and D. subobscura). The effect of collecting flies on CO2 was examined in both single and two male mating trials. The effect of CO2 has also been found to vary in D. melanogaster5and so different latency periods between exposure to CO2 and mating were tested. An alternative marking method to anaesthesia and wing clipping: the use of food dyes to stain the flies is also evaluated.

<table><tbody><tr><td>Plastic tubing</td><td>Fisher Scientific</td><td>TWT-200-061G</td><td>Other tubing may be suitable however it must fit within a 1ml pipette tip.</td></tr><tr><td>Fine mesh</td><td>Any haberdashery</td><td>-</td><td>Fine curtain mesh is suitable</td></tr><tr><td>1 ml pipette tips</td><td>VWR</td><td>83007-376</td><td>Various brands of pipette tips would be suitable</td></tr><tr><td>Plastic Vials</td><td>Sarstedt</td><td>58.49</td><td>Larger vials or bottles could also be used.</td></tr><tr><td>Cotton Balls</td><td>Lewis Medical Solutions</td><td>28170</td><td>The size of cotton will vary depending on the size of vials used</td></tr><tr><td>Blue Food colouring</td><td>Thesugarcraftcompany</td><td>-</td><td>Other dye colours and brands can have variable results.</td></tr><tr><td>CO&lt;sub&gt;2&lt;/sub&gt; Tank</td><td>BOC</td><td>BOC 40VK</td><td></td></tr><tr><td>Sharpie Markers</td><td>Steadtler</td><td>Lumocolor 313 S</td><td>Various colours can be used, but Lumocolor S give an excellent combination of durability and fineness</td></tr><tr><td>Stopwatch</td><td>Salter</td><td>SL3920</td><td>Any stopwatch with a good digital display would be fine</td></tr></tbody></table>

dyeing insects for behavioral assays: the mating behavior of anesthetized drosophila

Mating experiments using Drosophila have contributed greatly to the understanding of sexual selection and behavior. Experiments often require simple, easy and cheap methods to distinguish between individuals in a trial. A standard technique for this is CO2 anaesthesia and then labelling or wing clipping each fly. However, this is invasive and has been shown to affect behavior. Other techniques have used coloration to identify flies. This article presents a simple and non-invasive method for labelling Drosophila that allows them to be individually identified within experiments, using food coloring. This method is used in trials where two males compete to mate with a female. Dyeing allowed quick and easy identification. There was, however, some difference in the strength of the coloration across the three species tested. Data is presented showing the dye has a lower impact on mating behavior than CO2 in Drosophila melanogaster. The impact of CO2 anaesthesia is shown to depend on the species of Drosophila, with D. pseudoobscura and D. subobscura showing no impact, whereas D. melanogaster males had reduced mating success. The dye method presented is applicable to a wide range of experimental designs.

Two male mating trials &#8211; The effect of CO2 anaesthesia on mating behavior
The best model found to explain the variation in the effect of CO2 anaesthesia contained species as a factor (with D. pseudoobscura and D. subobscura fused as they showed no differences between each other). In D. pseudoobscura and D. subobscura there was no significant effect of CO2 anaesthesia on mating success in two male trials (Z1,589 = 0.087, P = 0.931). For D. melanogaster, males exposed to CO2 anaesthesia had significantly lower mating success (Z1,589 = 2.467, P = 0.014). There was also a significant interaction between species and treatment (&#967;21,589 = 6.83, P = 0.009) with a greater effect being seen when D. melanogaster&#160;were exposed to gas at collection or 1 day before trials (Table 1). However, D. melanogaster males exposed to CO2 two days before the experimental trial did not show an effect of CO2.
Two male mating trials &#8211; The effect of intestinal coloring on mating behavior
Model simplification showed no significant effect of food coloring being found for any of the three species (P &#62; 0.1). When treatment or gas status were included in the analysis these were also not significant (P &#62; 0.1). The proportions of successful matings for colored flies across treatments are shown in Table 2. The difference in coloration between flies kept on colored and uncolored food can be seen in Figure 1. The intensity of the intestinal food coloring was greater in D. pseudoobscura and D. subobscura than in D. melanogaster.
Single mating trials &#8211; The effect of using CO2 anaesthesia on mating behavior
There was no difference in mating latency for any of the three species when CO2 anaesthesia was used to collect recently emerged adults. An effect was found for mating duration in D. subobscura when it was exposed to CO2 two days before mating trials (Figures 2 and 3; Table 2).
<img alt="Figure 1" src="/files/ftp_upload/52645/52645fig1.jpg" /> 
Figure 1. Photograph showing Vials of Colored and Non Colored Fly Food (A) and the Strength of Intestinal Coloration in Male D. Subobscura (B).
<img alt="Figure 2" src="/files/ftp_upload/52645/52645fig2.jpg" /> 
Figure 2. The Mean and 95% Confidence intervals for Copulation Latency for the Three Species Investigated in Single Male Trials, When Males were Anaesthetized (light bars) or Not Anaesthetized (dark bars) when Collected as Virgins before Sexual Maturity.
<img alt="Figure 3" src="/files/ftp_upload/52645/52645fig3.jpg" /> 
Figure 3. The Mean and 95% Confidence Intervals for Copulation Duration for the Three Species Investigated in Single Male Trials, when Males were Anaesthetized (light bars) or Not Anaesthetized (dark bars) when Collected as Virgins before Sexual Maturity.
<table border="0" cellpadding="0" cellspacing="0">
	<tbody>
		<tr>
			<td>Treatment</td>
			<td>Species</td>
			<td>No. trials</td>
			<td>No. flies coloured that mated</td>
			<td>p-value</td>
			<td>No. flies gassed that mated</td>
			<td>p-value</td>
		</tr>
		<tr>
			<td rowspan="3">Collection on CO2</td>
			<td>D. mel</td>
			<td>73</td>
			<td>36</td>
			<td>1</td>
			<td>27</td>
			<td>0.0344</td>
		</tr>
		<tr>
			<td>D. pse</td>
			<td>79</td>
			<td>41</td>
			<td>0.8221</td>
			<td>44</td>
			<td>0.3682</td>
		</tr>
		<tr>
			<td>D. sub</td>
			<td>71</td>
			<td>40</td>
			<td>0.3425</td>
			<td>33</td>
			<td>0.6353</td>
		</tr>
		<tr>
			<td rowspan="3">Exposed to CO2 18 hrs prior</td>
			<td>D. mel</td>
			<td>57</td>
			<td>28</td>
			<td>1</td>
			<td>19</td>
			<td>0.0163</td>
		</tr>
		<tr>
			<td>D. pse</td>
			<td>65</td>
			<td>32</td>
			<td>1</td>
			<td>31</td>
			<td>0.8043</td>
		</tr>
		<tr>
			<td>D. sub</td>
			<td>68</td>
			<td>38</td>
			<td>0.3961</td>
			<td>35</td>
			<td>0.9036</td>
		</tr>
		<tr>
			<td rowspan="3">Exposed to CO2 2days.</td>
			<td>D. mel</td>
			<td>56</td>
			<td>19</td>
			<td>0.0222</td>
			<td>32</td>
			<td>0.3497</td>
		</tr>
		<tr>
			<td>D. pse</td>
			<td>70</td>
			<td>32</td>
			<td>0.5504</td>
			<td>33</td>
			<td>0.7202</td>
		</tr>
		<tr>
			<td>D. sub</td>
			<td>56</td>
			<td>29</td>
			<td>0.8939</td>
			<td>26</td>
			<td>0.6889</td>
		</tr>
	</tbody>
</table>
Table 1. Results from Two Male Choice Experiments Across All Species and Treatments Examined.
<table border="0" cellpadding="0" cellspacing="0">
	<tbody>
		<tr>
			<td>Species</td>
			<td>Trait</td>
			<td>d.f.</td>
			<td>t-value</td>
			<td>p-value</td>
		</tr>
		<tr>
			<td rowspan="2">D. melanogaster</td>
			<td>Latency</td>
			<td>58</td>
			<td>1.379</td>
			<td>0.174</td>
		</tr>
		<tr>
			<td>Duration</td>
			<td>58</td>
			<td>1.243</td>
			<td>0.221</td>
		</tr>
		<tr>
			<td rowspan="2">D. pseudoobscura</td>
			<td>Latency</td>
			<td>109</td>
			<td>0.419</td>
			<td>0.676</td>
		</tr>
		<tr>
			<td>Duration</td>
			<td>109</td>
			<td>0.436</td>
			<td>0.664</td>
		</tr>
		<tr>
			<td rowspan="2">D. subobscura</td>
			<td>Latency</td>
			<td>83</td>
			<td>0.098</td>
			<td>0.922</td>
		</tr>
		<tr>
			<td>Duration</td>
			<td>83</td>
			<td>1.767</td>
			<td>0.081</td>
		</tr>
	</tbody>
</table>
Table 2. Results from Single Mating Experiments Examining the Effect of Collection on CO2 Anaesthesia on the Mating Latency and Duration. Tests were carried out on three species of Drosophila (D. melanogaster, D. pseudoobscura and D. subobscura).

Watch this Scientific Journal Video about Dyeing Insects for Behavioral Assays: the Mating Behavior of Anesthetized Drosophila at JoVE.com

Dyeing Insects for Behavioral Assays: the Mating Behavior of Anesthetized Drosophila

This protocol describes a simple, cost effective way to individually identify Drosophila or other insects. Demonstration data investigating mating success across three species of Drosophila show that this method is comparable or better than the use of CO2 anaesthesia.

Dyeing Insects for Behavioral Assays: the Mating Behavior of Anesthetized Drosophila

Mating experiments using Drosophila have contributed greatly to the understanding of sexual selection and behavior. Experiments often require simple, easy ...

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9.8K Views.  University of Liverpool. This protocol describes a simple, cost effective way to individually identify Drosophila or other insects. Demonstration data investigating mating success across three species of Drosophila show that this method is comparable or better than the use of CO2 anaesthesia.

Video: Dyeing Insects for Behavioral Assays: the Mating Behavior of Anesthetized Drosophila

A Method to Test the Effect of Environmental Cues on Mating Behavior in Drosophila melanogaster

An individual's sexual drive is influenced by genotype, experience and environmental conditions. How these factors interact to modulate sexual behaviors remains poorly understood. In Drosophila melanogaster, environmental cues, such as food availability, affect mating activity offering a tractable system to investigate the mechanisms modulating sexual behavior. In D. melanogaster, environmental cues are often sensed via the chemosensory gustatory and olfactory systems. Here, we present a method to test the effect of environmental chemical cues on mating behavior. The assay consists of a small mating arena containing food medium and a mating couple. The mating frequency for each couple is continuously monitored for 24 h. Here we present the applicability of this assay to test environmental compounds from an external source through a pressurized air system as well as manipulation of the environmental components directly in the mating arena. The use of a pressurized air system is especially useful to test the effect of very volatile compounds, while manipulating components directly in the mating arena can be of value to ascertain a compound's presence. This assay can be adapted to answer questions about the influence of genetic and environmental cues on mating behavior and fecundity as well as other male and female reproductive behaviors.

A Method to Test the Effect of Environmental Cues on Mating Behavior in Drosophila melanogaster

We demonstrate an assay to analyze the environmental and genetic cues that influence mating behavior in the fruit fly Drosophila melanogaster.

An individual's sexual drive is influenced by genotype, experience and environmental conditions. How these factors interact to modulate sexual behaviors ...

Behavior

Methods to Assay Drosophila Behavior

Drosophila melanogaster, the fruit fly, has been used to study molecular mechanisms of a wide range of human diseases such as cancer, cardiovascular disease and various neurological diseases1. We have optimized simple and robust behavioral assays for determining larval locomotion, adult climbing ability (RING assay), and courtship behaviors of Drosophila. These behavioral assays are widely applicable for studying the role of genetic and environmental factors on fly behavior. Larval crawling ability can be reliably used for determining early stage changes in the crawling abilities of Drosophila larvae and also for examining effect of drugs or human disease genes (in transgenic flies) on their locomotion. The larval crawling assay becomes more applicable if expression or abolition of a gene causes lethality in pupal or adult stages, as these flies do not survive to adulthood where they otherwise could be assessed. This basic assay can also be used in conjunction with bright light or stress to examine additional behavioral responses in Drosophila larvae. Courtship behavior has been widely used to investigate genetic basis of sexual behavior, and can also be used to examine activity and coordination, as well as learning and memory. Drosophila courtship behavior involves the exchange of various sensory stimuli including visual, auditory, and chemosensory signals between males and females that lead to a complex series of well characterized motor behaviors culminating in successful copulation. Traditional adult climbing assays (negative geotaxis) are tedious, labor intensive, and time consuming, with significant variation between different trials2-4. The rapid iterative negative geotaxis (RING) assay5 has many advantages over more widely employed protocols, providing a reproducible, sensitive, and high throughput approach to quantify adult locomotor and negative geotaxis behaviors. In the RING assay, several genotypes or drug treatments can be tested simultaneously using large number of animals, with the high-throughput approach making it more amenable for screening experiments.

Methods to Assay Drosophila Behavior

Drosophila melanogaster is a genetically and behaviorally tractable model system that has been used to understand the molecular and cellular basis of many important biological processes for over a century 1. Drosophila has been well exploited to gain insights into the genetic basis of fly behavior.

Drosophila melanogaster, the fruit fly, has been used to study molecular mechanisms of a wide range of human diseases such as cancer, cardiovascular ...

A Single-fly Assay for Foraging Behavior in Drosophila

For many animals, hunger promotes changes in the olfactory system in a manner that facilitates the search for appropriate food sources. In this video article, we describe an automated assay to measure the effect of hunger or satiety on olfactory dependent food search behavior in the adult fruit fly Drosophila melanogaster. In a light-tight box illuminated by red light that is invisible to fruit flies, a camera linked to custom data acquisition software monitors the position of six flies simultaneously. Each fly is confined to walk in individual arenas containing a food odor at the center. The testing arenas rest on a porous floor that functions to prevent odor accumulation. Latency to locate the odor source, a metric that reflects olfactory sensitivity under different physiological states, is determined by software analysis. Here, we discuss the critical mechanics of running this behavioral paradigm and cover specific issues regarding fly loading, odor contamination, assay temperature, data quality, and statistical analysis.

A Single-fly Assay for Foraging Behavior in Drosophila

In this video article, we describe an automated assay to measure the effect of hunger or satiety on olfactory dependent food search behavior in the adult fruit fly Drosophila melanogaster.

For many animals, hunger promotes changes in the olfactory system in a manner that facilitates the search for appropriate food sources. In this video ...

An Adjustable High-Definition Imaging System for Behavioral Studies of Drosophila Adults

Drosophila melanogaster is a very powerful model in biological research, but a bad model for photography or videography. This paper describes a simple but effective method to observe and document the behavior or morphology of flies. Flies were placed in a translucent observation chamber c.a. &#216;15 x 5mm (no food inside) or &#216;15 x 12 mm (with an 8 mm-high piece of food inside). After covering with an ultraviolet (UV)/clear filter with high light transmittance, the chamber was placed under a 5-50x zoom stereo microscope, and mini light-emitting diode (LED) video lights were placed on both sides of the microscope to illuminate the chamber to obtain uniform, soft, bright, and nearly shadow-free light. Then, a compact digital camera with 3-5x optical zoom, which can record 1080 P high-definition or higher resolution video (at a frame rate of &#8805;30 fps), was connected to the eyepiece of microscope through a bracket, and photographs or videos were taken through the eyepiece. By adjusting the zoom knob of the zoom stereo microscope, it was very easy to track the flies and take panoramic or detailed close-up images as needed, while the camera recorded everything under the microscope. Because the flies can stay at any position in the chamber, they can be observed and recorded from all directions. The photographs or videos taken are of good image quality. This method can be used both for scientific research and teaching.

An Adjustable High-Definition Imaging System for Behavioral Studies of Drosophila Adults

This protocol describes how to make a simple adult Drosophila behavior observation chamber, and how to take high-definition photographs/videos of the morphology or behavior of different types of fruit flies in the observation chamber through relatively simple and affordable methods.

Drosophila melanogaster is a very powerful model in biological research, but a bad model for photography or videography. This paper describes a simple but ...

Straightforward Assay for Quantification of Social Avoidance in Drosophila melanogaster

Drosophila melanogaster is an emerging model to study different aspects of social interactions. For example, flies avoid areas previously occupied by stressed conspecifics due to an odorant released during stress known as the Drosophila stress odorant (dSO). Through the use of the T-maze apparatus, one can quantify the avoidance of the dSO by responder flies in a very affordable and robust assay. Conditions necessary to obtain a strong performance are presented here. A stressful experience is necessary for the flies to emit dSO, as well as enough emitter flies to cause a robust avoidance response to the presence of dSO. Genetic background, but not their group size, strongly altered the avoidance of the dSO by the responder flies. Canton-S and Elwood display a higher performance in avoiding the dSO than Oregon and Samarkand strains. This behavioral assay will allow identification of mechanisms underlying this social behavior, and the assessment of the influence of genes and environmental conditions on both emission and avoidance of the dSO. Such an assay can be included in batteries of simple diagnostic tests used to identify social deficiencies of mutants or environmental conditions of interest.

Straightforward Assay for Quantification of Social Avoidance in Drosophila melanogaster

Here, we present a protocol to quantify the avoidance of stressed individuals. This paradigm is powerful yet user-friendly and can be used to assess the influence of genes and environment on one kind of social interaction in Drosophila melanogaster.

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A Behavioral Assay for Mechanosensation of MARCM-based Clones in Drosophila melanogaster

Because of the structural and functional homology to the hair cells of the mammalian inner ear, the neurons that innervate the Drosophila external sense organs provide an excellent model system for the study of mechanosensation. This protocol describes a simple touch behavior in fruit flies which can be used to identify mutations that interfere with mechanosensation. The tactile stimulation of a macrochaete bristle on the thorax of flies elicits a grooming reflex from either the first or third leg. Mutations that interfere with mechanotransduction (such as NOMPC), or with other aspects of the reflex arc, can inhibit the grooming response. A traditional screen of adult behaviors would have missed mutants that have essential roles during development. Instead, this protocol combines the touch screen with mosaic analysis with a repressible cell marker (MARCM) to allow for only limited regions of homozygous mutant cells to be generated and marked by the expression of green fluorescent protein (GFP). By testing MARCM clones for abnormal behavioral responses, it is possible to screen a collection of lethal p-element mutations to search for new genes involved in mechanosensation that would have been missed by more traditional methods.

A Behavioral Assay for Mechanosensation of MARCM-based Clones in Drosophila melanogaster

In order to identify novel mutations affecting mechanosensation, we designed an assay that measures the behavioral response to tactile stimulation of fly bristles in mutant clones generated by the MARCM method. The combination of techniques allows for the identification of mechanosensitive mutations that would otherwise be lethal.

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Quantification of Drosophila Grooming Behavior

Drosophila grooming behavior is a complex multi-step locomotor program that requires coordinated movement of both forelegs and hindlegs. Here we present a grooming assay protocol and novel chamber design that is cost-efficient and scalable for either small or large-scale studies of Drosophila grooming. Flies are dusted all over their body with Brilliant Yellow dye and given time to remove the dye from their bodies within the chamber. Flies are then deposited in a set volume of ethanol to solubilize the dye. The relative spectral absorbance of dye-ethanol samples for groomed versus ungroomed animals are measured and recorded. The protocol yields quantitative data of dye accumulation for individual flies, which can be easily averaged and compared across samples. This allows experimental designs to easily evaluate grooming ability for mutant animal studies or circuit manipulations. This efficient procedure is both versatile and scalable. We show work-flow of the protocol and comparative data between WT animals and mutant animals for the Drosophila type I Dopamine Receptor (DopR).

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Measuring and Altering Mating Drive in Male Drosophila melanogaster

Despite decades of investigation, the neuronal and molecular bases of motivational states remain mysterious. We have recently developed a novel, reductionist, and scalable system for in-depth investigation of motivation using the mating drive of male Drosophila&#160;melanogaster (Drosophila), the methods for which we detail here. The behavioral paradigm centers on the finding that male mating drive decreases alongside fertility over the course of repeated copulations and recovers over ~3 d. In this system, the powerful neurogenetic tools available in the fly converge with the genetic accessibility and putative wiring diagram available for sexual behavior. This convergence allows rapid isolation and interrogation of small neuronal populations with specific motivational functions. Here we detail the design and execution of the satiety assay that is used to measure and alter courtship motivation in the male fly. Using this assay, we also demonstrate that low male mating drive can be overcome by stimulating dopaminergic neurons. The satiety assay is simple, affordable, and robust to influences of genetic background. We expect the satiety assay to generate many new insights into the neurobiology of motivational states.

Measuring and Altering Mating Drive in Male Drosophila melanogaster

This article describes a behavioral assay that uses male mating drive in Drosophila melanogaster to study motivation. Using this method, researchers can utilize advanced fly neurogenetic techniques to uncover the genetic, molecular, and cellular mechanisms that underlie this motivation.

Despite decades of investigation, the neuronal and molecular bases of motivational states remain mysterious. We have recently developed a novel, ...

Tracking Drosophila Larval Behavior in Response to Optogenetic Stimulation of Olfactory Neurons

The ability of insects to navigate toward odor sources is based on the activities of their first-order olfactory receptor neurons (ORNs). While a considerable amount of information has been generated regarding ORN responses to odorants, the role of specific ORNs in driving behavioral responses remains poorly understood. Complications in behavior analyses arise due to different volatilities of odorants that activate individual ORNs, multiple ORNs activated by single odorants, and the difficulty in replicating naturally observed temporal variations in olfactory stimuli using conventional odor-delivery methods in the laboratory. Here, we describe a protocol that analyzes Drosophila larval behavior in response to simultaneous optogenetic stimulation of its ORNs. The optogenetic technology used here allows for specificity of ORN activation and precise control of temporal patterns of ORN activation. Corresponding larval movement is tracked, digitally recorded, and analyzed using custom written software. By replacing odor stimuli with light stimuli, this method allows for a more precise control of individual ORN activation in order to study its impact on larval behavior. Our method could be further extended to study the impact of second-order projection neurons (PNs) as well as local neurons (LNs) on larval behavior. This method will thus enable a comprehensive dissection of olfactory circuit function and complement studies on how olfactory neuron activities translate in to behavior responses.

Tracking Drosophila Larval Behavior in Response to Optogenetic Stimulation of Olfactory Neurons

This protocol analyzes navigational behavior of Drosophila larva in response to simultaneous optogenetic stimulation of its olfactory neurons. Light of 630 nm wavelength is used to activate individual olfactory neurons expressing a red-shifted channel rhodopsin. Larval movement is simultaneously tracked, digitally recorded, and analyzed using custom-written software.

The ability of insects to navigate toward odor sources is based on the activities of their first-order olfactory receptor neurons (ORNs). While a ...

Behavioral Assays for Optogenetic Manipulation of Neural Circuits in Drosophila melanogaster

Optogenetics has become a fundamental technique in neuroscience, enabling precise control of neuronal activity through light stimulation. This study introduces easy-to-implement setups for applying optogenetic methods in Drosophila melanogaster. Two optogenetic tools, CsChrimson, a red-light-activated cation channel, and GtACR2, a blue-light-activated anion channel, were employed in four experimental approaches. Three of these approaches involve single-fly experiments: (1) a blue-light optogenetic thermotactic positional preference assay targeting temperature-sensitive heating cells, (2) a red-light optogenetic positional preference assay activating bitter sensing neurons, and (3) a proboscis extension response assay activating the sweet-sensing neurons. The fourth approach (4) is a fly maze setup to assess avoidance behaviors using multiple flies. The ability to manipulate neural activity temporally and spatially offers powerful insights into sensory processing and decision-making, underscoring the potential of optogenetics to advance our knowledge of neural function. These methods provide an accessible and robust framework for future research in neuroscience to enhance the understanding of specific neural pathways and their behavioral outcomes.

This paper presents methods for optogenetic manipulation in Drosophila melanogaster, utilizing CsChrimson and GtACR2 to activate and silence specific neurons. Four experiments are described to utilize optogenetics to explore thermotactic and gustatory behaviors, providing insights into the underlying neural mechanisms governing these processes.

Optogenetics has become a fundamental technique in neuroscience, enabling precise control of neuronal activity through light stimulation. This study ...

Dyeing Insects for Behavioral Assays: the Mating Behavior of Anesthetized Drosophila

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A Method to Test the Effect of Environmental Cues on Mating Behavior in Drosophila melanogaster

Methods to Assay Drosophila Behavior

A Single-fly Assay for Foraging Behavior in Drosophila

An Adjustable High-Definition Imaging System for Behavioral Studies of Drosophila Adults

Straightforward Assay for Quantification of Social Avoidance in Drosophila melanogaster

A Behavioral Assay for Mechanosensation of MARCM-based Clones in Drosophila melanogaster

Quantification of Drosophila Grooming Behavior

Measuring and Altering Mating Drive in Male Drosophila melanogaster

Tracking Drosophila Larval Behavior in Response to Optogenetic Stimulation of Olfactory Neurons

Behavioral Assays for Optogenetic Manipulation of Neural Circuits in Drosophila melanogaster