Name: sa-β-galactosidase-based screening assay for the identification of senotherapeutic drugs
Uploaded: 2019-06-28T14:30:00.000+00:00
Duration: 7 min 39 s
Description: Watch this Scientific Journal Video about SA-Î²-Galactosidase-Based Screening Assay for the Identification of Senotherapeutic Drugs at JoVE.com

This work was supported by NIH Grants AG043376 (Project 2 and Core A, PDR; Project 1 and Core B, LJN) and AG056278 (Project 3 and Core A, PDR; and Project 2, LJN) and a grant from the Glenn Foundation (LJN).

Animal use was approved by the Scripps Florida Institutional Animal Care and Use Committee.
1. Generation of senescent murine embryonic fibroblast (MEF) &#8211; 12-15 days
<ol>
	<li>Isolate wild type and Ercc1-/- MEFs from pregnant female mice at embryonic day 13 (E13) as described previously33. 
	NOTE: All following steps are carried out in a tissue culture hood under aseptic conditions and using sterile instruments.</li>
	<li>Resect the embryo head above the eyes.</li>
	<li>Remove the red tissue (heart and liver) and use them for genotyping if necessary.</li>
	<li>Prepare 500 mL of a 1:1 mixture of Dulbecco&#8217;s Modified Eagle&#8217;s Medium (DMEM) and Ham&#8217;s F10 with 10% fetal bovine serum, 1x nonessential amino acids, penicillin, and streptomycin as growth medium and warm it up to 37 &#176;C for around 15 min before each use. Store growth medium at 4 &#176;C.</li>
	<li>Incubate the rest of the embryo with 0.25% trypsin/EDTA for 10 min.</li>
	<li>Mince the embryo into 1 mm pieces and pipette the tissue up and down several times.</li>
	<li>Add 10 mL of growth medium and plate tissues of one embryo per 10 cm diameter cell culture plate (passage 0).</li>
	<li>Cultivate cells at 37 &#176;C, 3% O2, 5% CO2. 
	NOTE: Only MEF cells attach to non-coated tissue culture plates under these conditions.</li>
	<li>Change medium every day in passage 0 to remove non-attached tissue and cell fragments. 
	NOTE: Depending on the size of the embryo and the quality of the isolation, cell usually reach confluency after 2 to 3 days.</li>
	<li>Trypsinization
	<ol>
		<li>Carefully remove the growth medium and wash cells with 10 mL of 1x PBS two times.</li>
		<li>Add 2 mL of a 0.025% trypsin/EDTA solution to cells in 10 cm diameter plates and incubate at 37 &#176;C for 2-3 min.</li>
		<li>Make sure that cells are detached from the surface by inspecting the cells under the microscope.</li>
		<li>Terminate trypsin digestion by adding the same amount of growth medium.</li>
		<li>Transfer the cells to a conical tube and centrifuge cells at 200 x g for 3 min and discard the supernatant.</li>
		<li>Resuspend cells carefully in fresh growth medium, count cells and seed them in new plates at the projected cell density.</li>
	</ol>
	</li>
	<li>For non-senescent sub cultivation split confluent cells 1:4 and extend for another passage at 3% O2, 37 &#176;C to yield more cells (passage 1). 
	NOTE: At this point the cells can either be maintained in culture or stored for later use in liquid nitrogen, in cryovials containing approximately 1 million cells each. This step also offers the possibility to generate a mixed batch of cells from different animals to reduce variability coming from single animal analysis.</li>
	<li>To induce cell senescence, seed split confluent cells from passage 1 at a ratio of 1:4 and incubate them at 20% O2, 37 &#176;C, 5% CO2 for 3 days; these culture conditions are atmospheric for oxygen. 
	NOTE: Cultivation of cells and blastocysts under ambient oxygen concentrations can elevate markers of cellular senescence specifically when DNA damage repair is impaired34,35,36.</li>
	<li>Repeat this procedure for 2 more passages.</li>
	<li>To monitor cellular senescence, measure the gradual increase in cell diameter and cell volume during each trypsinization step using an advanced Coulter cell counter system.</li>
	<li>Assess the reduction in cell proliferation by determination of population doubling (PD) using the equation 
	PDT = (t2-t1)/3.32 x (log n2 &#8211; log n1) 
	NOTE: Population doubling time was only used for non-senescent cells.</li>
	<li>Use early passage wild-type or Ercc1-/- MEF cells that were kept at 3% O2, 37 &#176;C, 5% CO2 as non-senescent control cells.</li>
</ol>
2. Senescent associated &#946;-Gal screening assay &#8211; 2-3 days
<ol>
	<li>Prepare 10 mM stock solutions in DMSO of all drugs to be tested and store aliquots at -80 &#176;C. Do not freeze-thaw stock solutions as this may decrease the activity of drugs. 
	NOTE: Here, the HSP90 inhibitor 17DMAG was used as a senolytic drug capable of specifically killing senescent cells17.</li>
	<li>On the day of the experiment thaw the aliquot, dilute the drugs in fresh culture medium and add to the cells containing conditioned medium at a 1:1 ratio to yield the final concentration in growth medium.</li>
	<li>Use 96-well pre-dilution plates for serial dilutions and drug combinations. 
	NOTE: For MEF cells, it was empirically determined that DMSO concentrations should not exceed 2% and control cells treated with highest DMSO concentrations used should be included in each run.</li>
	<li>Seed 5 x 103 senescent cells or 3 x 103 non-senescent cells per well in 96 well plates at least 6 h prior to treatment in 100 &#181;L of growth medium and incubate at 20% O2, 37 &#176;C, 5% CO2. 
	NOTE: Cells should be about 80% confluent before treatment. </li>
	<li>Use black wall/clear bottom tissue culture, treated 96 well plates to minimize fluorescent signal crosstalk and background. 
	NOTE: However, clear plates have also been tested successfully.</li>
	<li>Add drug dilutions to MEF cells and incubate for 24 h to 48 h under 20% O2, 37 &#176;C, 5% CO2 conditions.</li>
	<li>Keep non-senescent cells under 3% O2, 37 &#176;C, 5% CO2 conditions.</li>
	<li>For lysosomal alkalinization, prepare a 10 mM bafilomycin A1 solution, aliquot and keep frozen at -20 &#176;C.</li>
	<li>For fluorescence analysis of SA-&#946;-Gal activity, prepare a 2 mM C12FDG stock solution, store at -20 &#176;C, and protect from light.</li>
	<li>For the working solution, prepare 100 &#181;M C12FDG in growth medium on the day of experiment. 
	NOTE: All (incubation) steps involving C12FDG should be performed in the dark.</li>
	<li>Remove the drug solution and wash cells 1 time with 100 &#181;L of 1x PBS.</li>
	<li>Induce lysosomal alkalinization by pretreating cells with 90 &#181;L of a 100 nM bafilomycin A1 solution prepared in fresh cell culture medium for 1 hour at 20% O2, 37 &#176;C, 5% CO2.</li>
	<li>Add 10 &#181;L of 100 &#181;M C12FDG working solution to the culture medium (final concentration 10 &#181;M).</li>
	<li>Incubate cells for 2 h.</li>
	<li>Add 2 &#181;L of a 100 &#181;g/mL Hoechst 33342 dye (final concentration 2 &#181;g/mL) to the culture and incubate for 20 min.</li>
	<li>Remove media and add 100 &#181;L of fresh growth medium.</li>
</ol>
3. Quantitative high content fluorescent image analysis
<ol>
	<li>Use a high content fluorescent image acquisition and analysis platform to acquire fluorescent images of the cells in the two channels appropriate for the capture of Hoechst and C12FDG fluorescence (e.g., DAPI and FITC channel presets, respectively). 
	NOTE: Acquisition protocols require the definition of several variables that are specific to the assay. The purpose of an acquisition protocol is to capture an adequate number of in-focus fluorescent images of sufficient numbers of cells for downstream quantitative analysis.</li>
	<li>Develop an appropriate analysis protocol by selecting each channel and defining, by adjusting one or more selective criteria, what qualifies as a feature of interest in each channel.
	<ol>
		<li>For the nucleus, use so segmentation pre-sets (e.g., nuclear segmentation, vesicle segmentation, cytoplasm segmentation) that will allow the identification of cellular organelles on the basis of multiple criteria including morphology, size, and signal intensity. Adjust these criteria to include nuclei while excluding nuclear fragments and debris which may have a signal, but which are, for example, too large or too small to be nuclei.</li>
		<li>Check the signal in the FITC channel which is fluorescence from cleaved C12FDG and represents the amount of senescence-associated &#946;-galactosidase activity in the cells. 
		NOTE: Senescent cells have a higher senescence-associated &#946;-galactosidase activity than non-senescent cells; however, C12FDG fluorescence will be non-discrete and continuous, necessitating the establishment of a threshold between what is considered a C12FDG-positive and a C12FDG-negative cell.</li>
		<li>Using commercially available analytical software, generate a count of instances in which a defined region surrounding the nucleus (a presumptive cell) has overlapped at least once with an above-threshold C12FDG. 
		NOTE: The analytical software automatically generates a count using target linking. This is the assay&#8217;s practical definition of a senescent, C12FDG-positive cell.</li>
	</ol>
	</li>
	<li>Analyze all samples in triplicate with 3-5 fields per well and mean values and standard deviations being calculated accordingly.</li>
	<li>Calculate the percentage of senescent cells using the following formula: 
	Senescent cells (%) = <img alt="Equation 1" src="/files/ftp_upload/58133/58133eq1.jpg" /> x 100</li>
</ol>
4. Assay validation parameters
<ol>
	<li>For all samples intra- and inter-assay coefficient of variations (%CVs) were calculated using the following formula: 
	Intra-assay CV (n = 10 repeats measured in one experiment) = <img alt="Equation 2" src="/files/ftp_upload/58133/58133eq2.jpg" /> x 100 (%) 
	Inter-assay CV (n = 5 independent experiments) = <img alt="Equation 2" src="/files/ftp_upload/58133/58133eq2.jpg" /> x 100 (%)</li>
	<li>For screening purposes, determine the Z&#8217; value, a statistical parameter to evaluate the quality of an assay, from cells treated with 200 nM rapamycin for 24 h at 20% O2, 37 &#176;C, 5% CO2 (a positive control for senotherapeutic drugs) and untreated senescent cells (negative control). 
	NOTE: The Z&#8217; value was calculated according to Zhang et al.37. Z&#8217; values between 0.5 and 1 indicate that an assay can be used for drug screening.</li>
</ol>

The authors have nothing to disclose.

SA-&#946;-Gal is a well-defined biomarker for cellular senescence originally discovered by Dimri&#160;et al. (1995) showing that senescent human fibroblasts have increased activity of SA-&#946;-Gal when assayed at pH 623 compared to proliferating cells. Meanwhile, in vitro and in vivo assay for SA-&#946;-Gal have been established for different cell types and tissues25,39,40. The fluorescence base...

Cellular senescence was described for the first time by Leonard Hayflick and Paul Moorhead, who showed that normal cells had a limited ability to proliferate in culture1. Senescent cells fail to proliferate despite the presence of nutrients, growth factors and lack of contact inhibition, but remain metabolically active2. This phenomenon is known as replicative senescence and was mainly attributed to the telomere shortening, at least in human cells3. Further studies have shown that cells can also be induced to undergo senescence in response to other stimuli, such as oncogenic stress (oncogene induced senescence, OIS), DNA damage, cytotoxic drugs, or irradiation (stress induced senescence, SIS)4,5,6. In response to DNA damage, including telomere erosion, cells either senesce, start uncontrolled cell growth, or undergo apoptosis if the damage cannot be repaired. In this case, cell senescence seems to be beneficial as it acts in a tumor suppressive manner2. In contrast, senescence is increased with aging due to the accumulation of cellular damage including DNA damage. Since senescent cells can secrete cytokines, metalloproteinases and growth factors, termed the senescence-associated secretory phenotype (SASP), this age-dependent increase in cellular senescence and SASP contributes to decreased tissue homeostasis and subsequently aging. Also, this age-dependent increase in the senescence burden is known to induce metabolic diseases, stress sensitivity, progeria syndromes, and impaired healing7,8 and is, in part, responsible for the numerous age-related diseases, such as atherosclerosis, osteoarthritis, muscular degeneration, ulcer formation, and Alzheimer&#39;s disease9,10,11,12,13. Eliminating senescent cells can help to prevent or delay tissue dysfunction and extend healthspan14. This has been shown in transgenic mouse models14,15,16 as well as by using senolytic drugs and drug combinations that were discovered through both drug screening efforts and bioinformatic analysis of pathways induced specifically in senescent cells17,18,19,20,21,22. Identifying more optimal senotherapeutic drugs, able to more effectively reduce the senescent cell burden, is an important next step in the development of therapeutic approaches for healthy aging.
Senescent cells show characteristic phenotypic and molecular features, both in culture and in vivo. These senescence markers could be either the cause or the result of senescence induction or a byproduct of molecular changes in these cells. However, no single marker is found specifically in senescent cells. Currently, senescence-associated &#946;-galactosidase (SA-&#946;-Gal) detection is one of the best-characterized and established single-cell based methods to measure senescence in vitro and in vivo. SA-&#946;-Gal is a lysosomal hydrolase with an optimal enzymatic activity at pH 4. Measuring its activity at pH 6 is possible because senescent cells show increased lysosomal activity23,24. For living cells, increased lysosomal pH is obtained by lysosomal alkalinization with the vacuolar H+-ATPase inhibitor Bafilomycin A1 or the endosomal acidification inhibitor chloroquine25,26. 5-Dodecanoylaminofluorescein Di-&#946;-D-galactopyranoside (C12FDG) is used as substrate in living cells as it retains the cleaved product in the cells due to its 12 carbon lipophilic moiety25. Importantly, SA-&#946;-Gal activity itself is not directly connected with any pathway identified in senescent cells and is not necessary to induce senescence. With this assay, senescent cells can be identified even in the heterogeneous cell populations and aging tissues, such as skin biopsies from older individuals. It also has been used to show a correlation between cell senescence and aging23 as it is a reliable marker for senescent cell detection in several organisms and conditions27,28,29,30. Here, a high throughput SA-&#946;-Gal screening assay based on the fluorescent substrate C12FDG using primary mouse embryonic fibroblasts (MEFs) with robustly oxidative stress induced cell senescence is described and its advantages and disadvantages are discussed. Although this assay can be performed with different cell types, the use of Ercc1-deficient, DNA repair impaired MEFs allows for more rapid induction of senescence under conditions of oxidative stress. In mice, reduced expression of the DNA repair endonuclease ERCC1-XPF causes impaired DNA repair, accelerated accumulation of endogenous DNA damage, elevated ROS, mitochondrial dysfunction, increased senescent cell burden, loss of stem cell function and premature aging, similar to natural aging31,32. Similarly, Ercc1-deficient MEFs undergo senescence more rapidly in culture17. An important feature of the senescent MEF assay is that each well has a mixture of senescent and non-senescent cells, allowing for the clear demonstration of senescent cell-specific effects. However, although we believe that the use of oxidative stress in primary cells to induce senescence is more physiologic, this assay also can be used with cell lines where senescence is induced with DNA damaging agents like etoposide or irradiation.

<table><tbody><tr><td>DMEM&amp;nbsp;</td><td>Corning</td><td>10-013-CV</td><td>medium</td></tr><tr><td>Ham&#039;s F10</td><td>Gibco</td><td>12390-035</td><td>medium</td></tr><tr><td>fetal bovine serum</td><td>Tissue Culture Biologics</td><td>101</td><td>serum</td></tr><tr><td>1x non-essential amino acids</td><td>Corning</td><td>25-025-Cl</td><td>amino-acids</td></tr><tr><td>bafilomycin A1&amp;nbsp;</td><td>Sigma</td><td>B1793</td><td>lysosomal inhibitor</td></tr><tr><td>C12FDG</td><td>Setareh Biotech</td><td>7188</td><td>b-Gal substrate</td></tr><tr><td>Hoechst 33342&amp;nbsp;</td><td>Life Technologies</td><td>H1399</td><td>DNA intercalation agent</td></tr><tr><td>17DMAG</td><td>Selleck Chemical LLC</td><td>50843</td><td>HSP90 inhibitor</td></tr><tr><td>InCell6000 Cell Imaging System</td><td>GE Healthcare</td><td></td><td>High Content Imaging System</td></tr></tbody></table>

sa-&#946;-galactosidase-based screening assay for the identification of senotherapeutic drugs

Cell senescence is one of the hallmarks of aging known to negatively influence a healthy lifespan. Drugs able to kill senescent cells specifically in cell culture, termed senolytics, can reduce the senescent cell burden in vivo and extend healthspan. Multiple classes of senolytics have been identified to date including HSP90 inhibitors, Bcl-2 family inhibitors, piperlongumine, a FOXO4 inhibitory peptide and the combination of Dasatinib/Quercetin. Detection of SA-&#946;-Gal at an increased lysosomal pH is one of the best characterized markers for the detection of senescent cells. Live cell measurements of senescence-associated &#946;-galactosidase (SA-&#946;-Gal) activity using the fluorescent substrate C12FDG in combination with the determination of the total cell number using a DNA intercalating Hoechst dye opens the possibility to screen for senotherapeutic drugs that either reduce overall SA-&#946;-Gal activity by killing of senescent cells (senolytics) or by suppressing SA-&#946;-Gal and other phenotypes of senescent cells (senomorphics). Use of a high content fluorescent image acquisition and analysis platform allows for the rapid, high throughput screening of drug libraries for effects on SA-&#946;-Gal, cell morphology and cell number.

SA-&#946;-Gal activity can be detected in cells that are induced to senesce by various ways from replicative exhaustion, genotoxic and oxidative stress, to oncogene activation23,25,38. In the current model using Ercc1-deficient mouse embryonic fibroblast cells, normoxic growth conditions (20% O2) were sufficient to induce cell senescence after cultivating them for a few passag...

Watch this Scientific Journal Video about SA-Î²-Galactosidase-Based Screening Assay for the Identification of Senotherapeutic Drugs at JoVE.com

SA-&#946;-Galactosidase-Based Screening Assay for the Identification of Senotherapeutic Drugs

Cellular senescence is the key factor in the development of chronic age-related pathologies. Identification of therapeutics that target senescent cells show promise for extending healthy aging. Here, we present a novel assay to screen for the identification of senotherapeutics based on measurement of senescence associated &#946;-Galactosidase activity in single cells.

Cell senescence is one of the hallmarks of aging known to negatively influence a healthy lifespan. Drugs able to kill senescent cells specifically in cell ...

sa-galactosidase-based-screening-assay-for-identification

Universidad de Cartagena UDEC

Research

JoVE Journal

Biology

23.7K Views.  The Scripps Research Institute. Cellular senescence is the key factor in the development of chronic age-related pathologies. Identification of therapeutics that target senescent cells show promise for extending healthy aging. Here, we present a novel assay to screen for the identification of senotherapeutics based on measurement of senescence associated β-Galactosidase activity in single cells.

Video: SA-β-Galactosidase-Based Screening Assay for the Identification of Senotherapeutic Drugs

A Sensitive Method to Quantify Senescent Cancer Cells

Human cells do not indefinitely proliferate. Upon external and/or intrinsic cues, cells might die or enter a stable cell cycle arrest called senescence. Several cellular mechanisms, such as telomere shortening and abnormal expression of mitogenic oncogenes, have been shown to cause senescence. Senescence is not restricted to normal cells; cancer cells have also been reported to senesce.
	Chemotherapeutical drugs have been shown to induce senescence in cancer cells. However, it remains controversial whether senescence prevents or promotes tumorigenesis. As it might eventually be patient-specific, a rapid and sensitive method to assess senescence in cancer cell will soon be required.
	To this end, the standard &beta;-galactosidase assay, the currently used method, presents major drawbacks: it is time consuming and not sensitive. We propose here a flow cytometry-based assay to study senescence on live cells. This assay offers the advantage of being rapid, sensitive, and can be coupled to the immunolabeling of various cellular markers.

Whether senescence prevents or promotes tumorigenesis remains controversial. Since chemotherapeutical drugs can induce cancer cells to senesce, studying senescence is essential for proposing new therapies. However, the standard and broadly used &beta;-galactosidase assay presents major drawbacks. We propose here a rapid and sensitive flow cytometry-based assay to quantify senescence.

Human cells do not indefinitely proliferate. Upon external and/or intrinsic  cues, cells might die or enter a stable cell cycle arrest called senescence. ...

Medicine

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The glioma stem cells (GSCs) are a small fraction of cancer cells which play essential roles in tumor initiation, angiogenesis, and drug resistance in glioblastoma (GBM), the most prevalent and devastating primary brain tumor. The presence of GSCs makes the GBM very refractory to most of individual targeted agents, so high-throughput screening methods are required to identify potential effective combination therapeutics. The protocol describes a simple workflow to enable rapid screening for potential combination therapy with synergistic interaction. The general steps of this workflow consist of establishing luciferase-tagged GSCs, preparing matrigel coated plates, combination drug screening, analyzing, and validating the results.

The glioma stem cells (GSCs) are a small fraction of cancer cells which play essential roles in tumor initiation, angiogenesis, and drug resistance in ...

Cancer Research

Simultaneous Imaging and Flow-Cytometry-based Detection of Multiple Fluorescent Senescence Markers in Therapy-Induced Senescent Cancer Cells

Chemotherapeutic drugs can induce irreparable DNA damage in cancer cells, leading to apoptosis or premature senescence. Unlike apoptotic cell death, senescence is a fundamentally different machinery restraining&#160;propagation of cancer cells. Decades of scientific studies have revealed the complex pathological effects of senescent cancer cells in tumors and microenvironments that modulate cancer cells and stromal cells. New evidence suggests that senescence is a potent prognostic factor during cancer treatment, and therefore rapid and accurate detection of senescent cells in cancer samples is essential. This paper presents a method to visualize and detect therapy-induced senescence (TIS) in cancer cells. Diffuse large B-cell lymphoma (DLBCL) cell lines were treated with mafosfamide (MAF) or daunorubicin (DN) and examined for the senescence marker, senescence-associated &#946;-galactosidase (SA-&#946;-gal), the DNA synthesis marker 5-ethynyl-2&#8242;-deoxyuridine (EdU), and the DNA damage marker gamma-H2AX (&#947;H2AX). Flow cytometer imaging can help generate high-resolution single-cell images in a short period of time to simultaneously visualize and quantify the three markers in cancer cells.

Here we present a flow cytometry-based method for visualization and quantification of multiple senescence-associated markers in single cells.

Chemotherapeutic drugs can induce irreparable DNA damage in cancer cells, leading to apoptosis or premature senescence. Unlike apoptotic cell death, ...

Far-Red Fluorescent Senescence-Associated &#946;-Galactosidase Probe for Identification and Enrichment of Senescent Tumor Cells by Flow Cytometry

Cellular senescence is a state of proliferative arrest induced by biological damage that normally accrues over years in aging cells but may also emerge rapidly in tumor cells as a response to damage induced by various cancer treatments. Tumor cell senescence is generally considered undesirable, as senescent cells become resistant to death and block tumor remission while exacerbating tumor malignancy and treatment resistance. Therefore, the identification of senescent tumor cells is of ongoing interest to the cancer research community. Various senescence assays exist, many based on the activity of the well-known senescence marker, senescence-associated beta-galactosidase (SA-&#946;-Gal). 
Typically, the SA-&#946;-Gal assay is performed using a chromogenic substrate (X-Gal) on fixed cells, with the slow and subjective enumeration of "blue" senescent cells by light microscopy. Improved assays using cell-permeant, fluorescent SA-&#946;-Gal substrates, including C12-FDG (green) and DDAO-Galactoside (DDAOG; far-red), have enabled the analysis of living cells and allowed the use of high-throughput fluorescent analysis platforms, including flow cytometers. C12-FDG is a well-documented probe for SA-&#946;-Gal, but its green fluorescent emission overlaps with intrinsic cellular autofluorescence (AF) that arises during senescence due to the accumulation of lipofuscin aggregates. By utilizing the far-red SA-&#946;-Gal probe DDAOG, green cellular autofluorescence can be used as a secondary parameter to confirm senescence, adding reliability to the assay. The remaining fluorescence channels can be used for cell viability staining or optional fluorescent immunolabeling.
Using flow cytometry, we demonstrate the use of DDAOG and lipofuscin autofluorescence as a dual-parameter assay for the identification of senescent tumor cells. Quantitation of the percentage of viable senescent cells is performed. If desired, an optional immunolabeling step may be included to evaluate cell surface antigens of interest. Identified senescent cells can also be flow cytometrically sorted and collected for downstream analysis. Collected senescent cells can be immediately lysed (e.g., for immunoassays or 'omics analysis) or further cultured.

A protocol for fluorescent, flow cytometric quantification of senescent cancer cells induced by chemotherapy drugs in cell culture or in murine tumor models is presented. Optional procedures include co-immunostaining, sample fixation to facilitate large batch or time point analysis, and the enrichment of viable senescent cells by flow cytometric sorting.

Cellular senescence is a state of proliferative arrest induced by biological damage that normally accrues over years in aging cells but may also emerge ...

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Genetic Profiling and Genome-Scale Dropout Screening to Identify Therapeutic Targets in Mouse Models of Malignant Peripheral Nerve Sheath Tumor

Malignant Peripheral Nerve Sheath Tumors (MPNSTs) are derived from Schwann cells or their precursors. In patients with the tumor susceptibility syndrome neurofibromatosis type 1 (NF1), MPNSTs are the most common malignancy and the leading cause of death. These rare and aggressive soft-tissue sarcomas offer a stark future, with 5-year disease-free survival rates of 34-60%. Treatment options for individuals with MPNSTs are disappointingly limited, with disfiguring surgery being the foremost treatment option. Many once-promising therapies such as tipifarnib, an inhibitor of Ras signaling, have failed clinically. Likewise, phase II clinical trials with erlotinib, which targets the epidermal growth factor (EFGR), and sorafenib, which targets the vascular endothelial growth factor receptor (VEGF), platelet-derived growth factor receptor (PDGF), and Raf, in combination with standard chemotherapy, have also failed to produce a response in patients. 
In recent years, functional genomic screening methods combined with genetic profiling of cancer cell lines have proven useful for identifying essential cytoplasmic signaling pathways and the development of target-specific therapies. In the case of rare tumor types, a variation of this approach known as cross-species comparative oncogenomics is increasingly being used to identify novel therapeutic targets. In cross-species comparative oncogenomics, genetic profiling and functional genomics are performed in genetically engineered mouse (GEM) models and the results are then validated in the rare human specimens and cell lines that are available. 
This paper describes how to identify candidate driver gene mutations in human and mouse MPNST cells using whole exome sequencing (WES). We then describe how to perform genome-scale shRNA screens to identify and compare critical signaling pathways in mouse and human MPNST cells and identify druggable targets in these pathways. These methodologies provide an effective approach to identifying new therapeutic targets in a variety of human cancer types.

Author Spotlight: Finding New Therapeutic Targets for Malignant Peripheral Nerve Sheath Tumor Through Genome-Scale shRNA Screens 

We have developed a cross-species comparative oncogenomics approach utilizing genomic analyses and functional genomic screens to identify and compare therapeutic targets in tumors arising in genetically engineered mouse models and the corresponding human tumor type.

Malignant Peripheral Nerve Sheath Tumors (MPNSTs) are derived from Schwann cells or their precursors. In patients with the tumor susceptibility syndrome ...

Techniques to Induce and Quantify Cellular Senescence

In response to cellular stress or damage, proliferating cells can induce a specific program that initiates a state of long-term cell-cycle arrest, termed cellular senescence. Accumulation of senescent cells occurs with organismal aging and through continual culturing in vitro. Senescent cells influence many biological processes, including embryonic development, tissue repair and regeneration, tumor suppression, and aging. Hallmarks of senescent cells include, but are not limited to, increased senescence-associated &#946;-galactosidase activity (SA-&#946;-gal); p16INK4A, p53, and p21 levels; higher levels of DNA damage, including &#947;-H2AX; the formation of Senescence-associated Heterochromatin Foci (SAHF); and the acquisition of a Senescence-associated Secretory Phenotype (SASP), a phenomenon characterized by the secretion of a number of pro-inflammatory cytokines and signaling molecules. Here, we describe protocols for both replicative and DNA damage-induced senescence in cultured cells. In addition, we highlight techniques to monitor the senescent phenotype using several senescence-associated markers, including SA-&#946;-gal, &#947;-H2AX and SAHF staining, and to quantify protein and mRNA levels of cell cycle regulators and SASP factors. These methods can be applied to the assessment of senescence in various models and tissues.

Cellular senescence, the irreversible state of cell-cycle arrest, can be induced by various cellular stresses. Here, we describe protocols to induce cellular senescence and methods to assess markers of senescence.

In response to cellular stress or damage, proliferating cells can induce a specific program that initiates a state of long-term cell-cycle arrest, termed ...

High-Throughput Screening Analysis for 4B Cysteine Peptidase Autophagy Inhibitor

Cell-Based Drug Screening for Inhibitors of Autophagy Related 4B Cysteine Peptidase

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Author Spotlight: A Selective Luciferase-Based Assay for Monitoring ATG4B 27 Activity in Cells 

Here, we describe a detailed protocol for the use of a luciferase-based reporter assay in a semi-automated, high-throughput screening format.

Growing evidence has shown that high autophagic flux is related to tumor progression and cancer therapy resistance. Assaying individual autophagy proteins ...

Cellular Bioluminescence Based Assay: A High Throughput Method for Combinatorial Drug Screening

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In this video, we describe a method highlighting the utility of bioluminescence assay for sensitive and rapid screening of drugs. These drugs can be tested alone or in combination to assess the synergism in their mode of action.

Source: Hu, Z. et al. A Rapid Screening Workflow to Identify Potential Combination Therapy for GBM using Patient-Derived Glioma Stem Cells.&#160;J. Vis. ...

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Cancers of the Nervous System

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An Assay for Analyzing Test &beta;-Glucan as an Immunotherapy Strategy against Brain Cancer Cells

Source: Folgado-Dorado, C. et al., <a href="https://appjove.unicartagenaproxy.elogim.com/v/64924">Isolation and Purification of Fungal &#946;-Glucan as an Immunotherapy Strategy for Glioblastoma.</a> J. Vis. Exp. (2023)
This video demonstrates an in vitro assay utilizing &#946;-glucans to activate microglial cells for the production of superoxide radicals, a reactive oxygen species. In brain cancer cells, the generated reactive oxidants actively suppress tumor cell proliferation and induce cell death.

In vitro study of &#946;-glucan-induced microglia stimulation
1. Cell culture of mouse glioblastoma and microglia cells in 8-well chamber slides
NOTE: ...

Immunology

Immunotherapy

Cellular Immunotherapy

Flow Cytometry-Based Quantification of Therapy-Induced Senescent Cancer Cells

Source: Flor, A., et al. <a href="https://appjove.unicartagenaproxy.elogim.com/v/64176">Far-Red Fluorescent Senescence-Associated &#946;-Galactosidase Probe for Identification and Enrichment of Senescent Tumor Cells by Flow Cytometry.</a> J. Vis. Exp. (2022)
This video illustrates a flow cytometry-based assay for quantifying therapy-induced senescent cancer cells with dual senescence markers. The detection and quantification of senescent cells involve using a &#946;-galactosidase substrate. The substrate is cleaved by active lysosomal &#946;-galactosidase within the senescent cells, producing a fluorescent product that, in conjunction with autofluorescent lipofuscin granules, marks the senescent cancer cells.

1. Induction of senescence by chemotherapy drugs in cultured cancer cells
NOTE: All cell manipulation steps in this section should be performed in a ...

SA-β-Galactosidase-Based Screening Assay for the Identification of Senotherapeutic Drugs

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