We would like to thank the entire Neukomm lab for contributions. This work was supported by a Swiss National Science Foundation (SNSF) Assistant Professor award (grant 176855), the International Foundation for Research in Paraplegia (IRP, grant P180), SNSF Spark (grant 190919) and by support from the University of Lausanne and the Department of Fundamental Neurosciences (&#201;tat de Vaud) to LJN.

1. Observation of Axon Morphology During Axon Death in the PNS
<ol>
	<li>Wing injury: partial injury of axon bundles
	<ol>
		<li>Use 5 virgin females and 5 males from the right genotype (Figure 4A, P0 generation) to perform crosses at room temperature (RT). Pass P0 into new vials every 3&#8211;4 days. Collect freshly eclosed adult progeny (F1 generation) daily and age them for 7&#8211;14 days.</li>
		<li>Anesthetize flies on CO2 pads. Use micro scissors to cut the anterior wing vein roughly in the middle of the wing (Figure 1A). Use one wing for the injury and the other wing as an age-matched uninjured control. Apply one injury per wing, and make sure to get sufficient wings injured (approximately 15 wings). 
		NOTE: The whole wing can be cut through, but it is sufficient to cut only the anterior wing vein. This is the strongest part of the wing.</li>
		<li>Recover the flies in food-containing vials.</li>
	</ol>
	</li>
	<li>Wing dissection and visualization of axons
	<ol>
		<li>Spread 10 &#181;L of halocarbon oil 27 with a pipette along a whole glass slide (Figure 1B).</li>
		<li>Cut off the injured, as well as, the uninjured control wing at desired time points (e.g., 1 or 7 days post injury). Use micro scissors to cut, and tweezers to grab the wing. Mount maximal 4 wings into halocarbon oil 27 (Figure 1B) and cover them with a cover slide.</li>
		<li>Image the wing immediately using a spinning disk microscope. Acquire a series of optical sections along the z-axis with 0.33 &#956;m step-size and compress z-stacks into a single file for subsequent analyses. 
		NOTE: Do not grab the anterior wing vein where cell bodies and axons are housed. Grab the wing at the center. The tissue in wings is not fixed; keep the time from mounting wings to imaging these under 8 min.</li>
	</ol>
	</li>
</ol>
<img alt="Figure 1" class="xfigimg" src="/files/ftp_upload/60865/60865fig01.jpg" /> 
Figure 1: Observation of axon morphology during axon death in the wing. (A) Schematic fly wing with two sparsely GFP-labeled sensory neurons, which are also separately indicated below. The site of injury and the field of observation are indicated. (B) Schematic setup for wing imaging. Injured and uninjured control wings (grey) are mounted in halocarbon oil 27 (red) on a glass slide (light blue) and covered with a cover slide (black). <a href="https://jove.unicartagenaproxy.elogim.com/files/ftp_upload/60865/60865fig01large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
2. Observation of Axon and Synapse Morphology During Axon Death in the CNS
<ol>
	<li>Antennal ablation: injury of whole axon bundles
	<ol>
		<li>Use 5 virgin females and 5 males from the right genotype (Figure 5A, P0 generation) to perform crosses at RT. Pass P0 into new vials every 3&#8211;4 days. Collect freshly eclosed adult progeny (F1 generation) daily and let them age for 7 up to 14 days.</li>
		<li>Anesthetize flies on CO2 pads. Use tweezers to ablate the right 3rd antennal segment for unilateral ablation; or both left and right 3rd antennal segments for bilateral ablation (Figure 2A-C). This will remove GFP-labeled neuronal cell bodies, while their axonal projections remain in the CNS. 
		NOTE: Antennal ablation severs the whole axon bundle. If unilateral ablation is performed, the axon bundle on the contralateral side (the unablated antenna) serves as internal control. Make sure to perform sufficient antennal ablations (approximately 15 animals).</li>
		<li>Recover the flies in food-containing vials.</li>
	</ol>
	</li>
	<li>Brain dissection and visualization of axons
	<ol>
		<li>Mix silicone elastomer base (9 mL) and curing agent (1 mL) in a volume ratio of 10:1. Transfer each 5 mL mixture into a 35 mm tissue culture plate, and reduce air introduced by mixing with gentle agitation in the fume hood overnight. The mixture solidifies within 24 h. 
		NOTE: Dissection plates must be prepared only once and may be used multiple times.</li>
		<li>Anesthetize flies on CO2 pads and decapitate adult heads using two tweezers at desired time points (e.g., 1 or 7 days after antennal ablation). Use one tweezer to grab the neck, and the other tweezer to fix the thorax. Gently pull the neck and head off the thorax. 
		NOTE: Leave decapitated heads on the CO2 pad until the desired number is achieved, but make sure to proceed to the next step within 30 min.</li>
		<li>Transfer all heads into a 1.5 mL microcentrifuge tube containing 1 mL of fixing solution containing 4% paraformaldehyde (PFA) and 0.1% Triton X-100 in phosphate buffered saline (PBS) using tweezers that have been dipped into the fixing solution. 
		NOTE: Fly heads stick well on wet tweezers. It makes it feasible to transfer all heads readily into the microcentrifuge tube.</li>
		<li>Fix heads for 20 min with gentle agitation at RT. Put the microcentrifuge tube on ice, heads will gravitate to the bottom of the microcentrifuge tube. Remove the supernatant with a pipette and repeat this procedure with five 2 min washes with 1 mL of washing buffer containing 0.1% Triton X-100 in PBS with gentle agitation at RT, to remove residual fixing solution. 
		NOTE: Videos on how to dissect adult Drosophila brains are readily available27.</li>
		<li>Transfer the heads with a glass pipette into a dissection plate filled with washing buffer. Use one tweezer to grab and pull the proboscis off the head, while holding the head with the other tweezer. This will leave a hole were the proboscis was attached to the exoskeleton.</li>
		<li>Use two tweezers to remove the exoskeleton between the hole and each compound eye. This will make it feasible to open the head structure with both tweezers, and to gently scratch out the brain within.</li>
		<li>Clean each brain by removing trachea or fat stuck to it (Figure 2D, top). Once the brain is cleaned, put it in a new microcentrifuge tube containing 1 mL of washing buffer on ice. 
		NOTE: Damaged or lost optic lobes will not affect the olfactory lobe in the center of the brain (Figure 2D, top).</li>
		<li>Replace washing buffer with 1 mL of fixing solution once all brains are collected and accumulated at the bottom of the microcentrifuge tube. Fix brains for 10 min with rocking at RT, followed by five 2 min washes in 1 mL of washing buffer with rocking at RT.</li>
		<li>Apply primary antibodies (1:500) in washing buffer overnight with rocking at 4 &#176;C, followed by 10 washes over 2 h using 1 mL of washing buffer with rocking at RT.</li>
		<li>Apply secondary antibodies (1:500) in washing buffer 2 h with rocking at RT and wrap microcentrifuge tube in aluminum foil to block light. Keep the microcentrifuge tube covered with aluminum foil for the rest of the procedure. Apply ten washes with 1 mL of washing buffer over 2 h with rocking at RT.</li>
		<li>Remove the supernatant and use a single drop of antifade reagent to cover the brains in the microcentrifuge tube. Incubate brains for at least 30 min at 4 &#176;C before preparing them for mounting and imaging.</li>
		<li>Prepare a cover slide, stick lab tape on it, and cut out a &#34;T&#34;-like shape from the tape (Figure 2D, bottom). The resulting space serves as area where the brain-containing antifade reagent28 will be pipetted into, preferably into both chambers. 
		NOTE: Use a 20-200 &#181;L pipette tip where 3 mm of the tip has been cut off to widen the opening of the pipette. This will make it feasible to pipette the brain-containing antifade reagent. Carefully cover the brains with a cover slide.</li>
		<li>Use clay to prepare two small even rolls. Ensure that the clay rolls are not higher than the height of a glass slide. Stick the clay rolls onto the glass slide (Figure 2D, bottom). Place the brain-containing cover slide sandwich onto the clay rolls. 
		NOTE: GFP-labeled axons and their synapses are located in the front of the brain. It is, therefore, easier to image them from the front. However, brains will either face up, or face down on the cover slide sandwich. Clay rolls serve as sandwich holders, and during imaging, the sandwich can be flipped upside down. This will make it feasible to acquire images from the front from every brain.</li>
		<li>Acquire a series of optical sections along the z-axis with 1.0 &#956;m step-size using a confocal microscope, and compress z-stacks into a single file for subsequent analyses, to assess the number of axonal projections remaining intact.</li>
	</ol>
	</li>
</ol>
<img alt="Figure 2" class="xfigimg" src="/files/ftp_upload/60865/60865fig02.jpg" /> 
Figure 2: Observation of axon and synapse morphology during axon death in the brain. (A) Side view of a schematic fly head with GFP-labeled cell bodies, axons and synapses. (B) High-magnification front view of GPF-labeled olfactory receptor neurons and their axons and synapses. Cell bodies are housed in the 3rd antennal segment, and their axons project into the CNS. Axons form synapses in a glomerulus in the left olfactory lobe, cross the midline and form synapses in the glomerulus on the contralateral olfactory lobe. (C) Examples of fly heads with unilateral antennal ablation. Top: Uninjured control. Middle: Ablation of the 3rd antennal segment. Bottom: Ablation of the 2nd (and thus also 3rd) antennal segment. (D) Brain preparation. Top: Schematic dissected fly brain with indicated olfactory lobes and axonal projections in the field of view. Bottom: Schematic setup for brain imaging. Two clay rolls (green) are mounted onto a glass slide (light blue), they carry a cover slide sandwich, which contains fly brains (grey). Brains are mounted in antifade reagent(purple), surrounded by a lab tape (orange), and covered by two cover slides (black). <a href="https://jove.unicartagenaproxy.elogim.com/files/ftp_upload/60865/60865fig02large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
3. Grooming Induced by Optogenetics as a Readout for Axon and Synapse Function
<ol>
	<li>Optogenetic setup
	<ol>
		<li>Perform the optogenetic experiment in a dark room. Ensure that the setup consists of an 850 nm infrared (IR) LED spotlight to illuminate flies in the dark (Figure 3A), a flashing 660 nm red LED spotlight to activate neurons expressing CsChrimson, and a monochrome camera with a 700 nm longpass filter, which prevents the recording of red light flashes.</li>
		<li>Use a 3D printer to generate a tiny circular behavior chamber with a diameter of 1 cm, cover it with a cover slide, and place an 860 nm emitter coupled to the red LED spotlight next to the chamber (Figure 3B). 
		NOTE: The emitter indicates when the red LED spotlight is on, thus activating the neurons.</li>
		<li>Mount the LED spotlights and the camera on top of the chamber (Figure 3A, C).</li>
		<li>Activate neurons by 10 Hz flashes during 10 s. The duration of activation can be adjusted according to the experimental design.</li>
	</ol>
	</li>
	<li>Preparing flies for optogenetics
	<ol>
		<li>Melt fly food in a microwave. After the food cooled down, before solidification, add 1:100 of 20 mM all trans-retinal in ethanol (EtOH) to a final concentration of 200 &#181;M. Mix well, and pour the food immediately into empty vials. 
		NOTE: Avoid adding all trans-retinal to hot food, this could result in less efficient optogenetics.</li>
		<li>Cover vials containing solidified food with plugs or cotton balls. Wrap vials with aluminum foil. Then, store the food-containing vials in a dark, cold room.</li>
		<li>Use 5 virgin females and 5 males (Figure 6A, generation P0) from the right genotype to perform crosses at RT. Pass P0 into new vials every 3&#8211;4 days. Collect freshly eclosed adult progeny (generation F1) on a daily base and let them age for 7 up to 14 days in aluminum-covered vials containing 200 &#181;M all trans-retinal in fly food.</li>
		<li>Collect flies by tapping them from food-containing vials into an empty vial with no food. Cool the vial down in ice-containing water for approximately 30 s. Flies will fall asleep. Put individual flies rapidly into small chambers covered with a cover slide (Figure 3B). 
		NOTE: As soon as flies warm up, they wake up. It is crucial to quickly spread individual flies into single chambers each. Avoid CO2 pads to anaesthetize flies, this will impact their behavior.</li>
		<li>Perform optogenetics to elicit antennal grooming. Here, the protocol consists of the following intervals: 30 s where the red light is absent, followed by 10 s of red-light exposure at 10 Hz. Repeat this procedure three times in total, followed by an additional 30 s interval where the red light is absent12,29,30. 
		NOTE: This protocol can be adjusted according to the experimental preference.</li>
		<li>Collect individual flies from each chamber on CO2 pads. Subject them to antennal injury. Ablate both the left and the right 2nd antennal segments (Figure 2C). This will remove the cell bodies of Johnston&#39;s organ (JO) neurons, while the axonal projections remain in the CNS. Recover the flies in aluminum-covered vials containing 200 &#181;M all trans-retinal. 
		NOTE: For antennal grooming induced by optogenetics, the sensory neuron cell bodies are housed in the 2nd antennal segment (Figure 2C).</li>
		<li>At corresponding time points (e.g., 7 days post antennal ablation), subject flies to another grooming assay (go back to step 3.2.4).</li>
	</ol>
	</li>
</ol>
<img alt="Figure 3" class="xfigimg" src="/files/ftp_upload/60865/60865fig03.jpg" /> 
Figure 3: Optogenetic setup to induce grooming as a readout for axon and synapse function. (A) Illustration of assembled components required for optogenetics. Infrared (IR) LED spotlight, camera and red LED spotlight (from left to right, respectively). The components including a detailed description are listed in the Table of Materials. (B) Top view illustration of a behavior chamber including an IR emitter to indicate red LED spotlight activation. (C) Illustration of a single mount setup. A total of three mount setups are required for the two LED spotlights and the camera, respectively. <a href="https://jove.unicartagenaproxy.elogim.com/files/ftp_upload/60865/60865fig03large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>

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M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+neural+command+circuit+for+grooming+movement+control.">A neural command circuit for grooming movement control.</a> eLife. 4, 08758 (2015).</li><li>Lee, T., Luo, L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Mosaic+analysis+with+a+repressible+cell+marker+for+studies+of+gene+function+in+neuronal+morphogenesis.">Mosaic analysis with a repressible cell marker for studies of gene function in neuronal morphogenesis.</a> Neuron. 22 (3), 451-461 (1999).</li><li>Vosshall, L. B., Wong, A. M., Axel, R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=An+olfactory+sensory+map+in+the+fly+brain.">An olfactory sensory map in the fly brain.</a> Cell. 102 (2), 147-159 (2000).</li><li>Hampel, S., McKellar, C. E., Simpson, J. H., Seeds, A. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Simultaneous+activation+of+parallel+sensory+pathways+promotes+a+grooming+sequence+in+Drosophila.">Simultaneous activation of parallel sensory pathways promotes a grooming sequence in Drosophila.</a> eLife. 6, (2017).</li><li>Farley, J. E., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Transcription+factor+Pebbled/RREB1+regulates+injury-induced+axon+degeneration.">Transcription factor Pebbled/RREB1 regulates injury-induced axon degeneration.</a> Proceedings of the National Academy of Sciences of the United States of America. 23 (6), (2018).</li><li>Wang, H., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Rapid+depletion+of+ESCRT+protein+Vps4+underlies+injury-induced+autophagic+impediment+and+Wallerian+degeneration.">Rapid depletion of ESCRT protein Vps4 underlies injury-induced autophagic impediment and Wallerian degeneration.</a> Science Advances. 5 (2), 4971 (2019).</li><li>Dietzl, G., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+genome-wide+transgenic+RNAi+library+for+conditional+gene+inactivation+in+Drosophila.">A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila.</a> Nature. 448 (7150), 151-156 (2007).</li><li>Port, F., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+large-scale+resource+for+tissue-specific+CRISPR+mutagenesis+in+Drosophila.">A large-scale resource for tissue-specific CRISPR mutagenesis in Drosophila.</a> bioRxiv. 102, 636076 (2019).</li><li>Vagnoni, A., Hoffmann, P. C., Bullock, S. L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Reducing+Lissencephaly-1+levels+augments+mitochondrial+transport+and+has+a+protective+effect+in+adult+Drosophila+neurons.">Reducing Lissencephaly-1 levels augments mitochondrial transport and has a protective effect in adult Drosophila neurons.</a> Journal of Cell Science. 129 (1), 178-190 (2016).</li><li>Vagnoni, A., Bullock, S. L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+cAMP/PKA/Kinesin-1+Axis+Promotes+the+Axonal+Transport+of+Mitochondria+in+Aging+Drosophila+Neurons.">A cAMP/PKA/Kinesin-1 Axis Promotes the Axonal Transport of Mitochondria in Aging Drosophila Neurons.</a> Current Biology. 28 (8), 1265-1272 (2018).</li><li>Cao, X., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=In+vivo+imaging+reveals+mitophagy+independence+in+the+maintenance+of+axonal+mitochondria+during+normal+aging.">In vivo imaging reveals mitophagy independence in the maintenance of axonal mitochondria during normal aging.</a> Aging Cell. 16 (5), 1180-1190 (2017).</li><li>Smith, G. 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The authors declare that they have nothing to disclose.

The protocols described here allow for the robust and reproducible observation of morphology as well as function of axons and their synapses separated from their cell bodies in Drosophila. The wing assay facilitates the observation of axon death side-by-side of uninjured control axons in the PNS14, while the antennal assay facilitates the observation of whole nerve bundles of GFP-labeled axons and their synapses, to assess both morphology and function in the brain (CNS)12. There are critical steps and certain advantages for each approach to study morphology that have to be taken into consideration when designing experiments.
To observe axon morphology in the PNS in the wing, experiments can be readily performed, because of the transparency of the wing: it allows to bypass dissection and immunohistochemistry. However, due to the lack of fixation, the wings have to be imaged immediately after mounting14. Currently, two distinct Gal4 drivers are frequently used, either ok371Gal4 or dpr1Gal4, and both references offer distinct approaches to quantify degeneration14,26. Sparse labeling of a few neurons is recommended, by using &#34;Mosaic Analysis with a Repressible Cell Marker (MARCM)&#34;14,31, as the resolution of axonal morphology is unprecedented. In contrast, the observation of synapses is not possible in wings, they are located in the ventral nerve cord inside the thorax of the flies. Furthermore, additional axonal markers cannot be visualized by immunohistochemistry: the waxy cuticle makes it impossible for the diffusion of fixatives and antibodies into the underlying tissue.
To observe axon and synapse morphology in the CNS, brain dissections have to be performed. They offer the advantage of visualizing additional axonal and synaptic markers by the use of immunohistochemistry, and synapses can be observed alongside axons in the same field of view10,13. A large collection of characterized olfactory receptor neuron (ORN) Gal4 drivers is readily available32, and frequently, OR22aGal4 is the driver of choice. For antennal ablation, cell bodies of OR22a neurons are housed in the 3rd segment (Figure 2B). A fluorescence intensity-based quantification is used to quantify the degeneration of either axons or synapses13. Conversely, experiments are time consuming due to brain dissection and antibody staining.
To visualize axonal and synaptic function after axotomy, optogenetics is used to trigger antennal grooming: it serves as a readout for functional preservation of severed axons and their synapses12. The grooming circuit and corresponding sensory, inter- and motorneuron Gal4 drivers have been thoroughly described29,30. GMR60E02Gal4 labels a subset of Johnston&#39;s organ (JO) sensory neurons, which are required and sufficient for grooming29,30. For antennal ablation, cell bodies of JO neurons are housed in the 2nd antennal segment (Figure 2B). An optogenetic setup can readily be built from scratch, or an existing setup adjusted. Importantly, experiments have to be performed in a dark room, and flies thus visualized with an infrared (IR) LED spotlight. When using CsChrimson as a channel, it is crucial to supply the food with all trans-retinal and a red LED spotlight to activate JO neurons29. Alternatively, blue light-sensitive channels and a blue LED spotlight, or the TrpA1 channel and temperature can be used for neuronal activation29,33. The quantification of grooming behavior has already been described12,29.
When these assays are used to specifically study axon death, it is important to note that the phenotype of morphological or functional preservation should be robust over time. There are cases where axon death leads to a consistent yet less pronounced phenotype in morphological preservation34,35, and whether such a phenotype translates into functional preservation remains to be determined.
Axon death phenotypes have also been observed in neurons during development of Drosophila larvae, where nerves were crushed rather than injured11,23. Here, we specifically focused on adult Drosophila neurons which completed development. In this context, the use of RNA interference36, or tissue-specific CRISPR/Cas937 can readily be implemented. Importantly, the above techniques can be used in an axon death independent context: they facilitate the characterization of neuronal maintenance factors38, axonal transport39, age-dependent axonal mitochondria changes40, and morphology of axonal mitochondria41.

The morphological integrity of neurons is essential for sustained nervous system function throughout life. The vast majority of the neuronal volume is taken by axons1,2; thus life-long maintenance of particularly long axons is a major biological and bioenergetic challenge for the nervous system. Multiple axonal-intrinsic and glial-extrinsic support mechanisms have been identified, ensuring life-long axonal survival. Their impairment results in axon degeneration3, which is a common feature of nervous systems being challenged in disease, and by mechanical or chemical forces4,5. However, the underlying molecular mechanisms of axon degeneration remain poorly understood in any context, making the development of efficacious treatments to block axon loss challenging. The development of effective therapies against these neurological conditions is important, as they create an enormous burden in our society6.
Injury-induced axon degeneration serves as a simple model to study how severed axons execute their own disassembly. Discovered by and named after Augustus Waller in 1850, Wallerian degeneration (WD) is an umbrella term that comprises two distinct, molecularly separable processes7. First, after axonal injury, axons separated from their cell bodies actively execute their own self-destruction (axon death) through an evolutionarily conserved axon death signaling cascade within one day after injury8. Second, surrounding glia and specialized phagocytes engage and clear the resulting axonal debris within three to five days. The attenuation of axon death signaling results in severed axons that remain preserved for weeks9,10,11,12, while the attenuation of glial engulfment culminates in axonal debris which persists for weeks in vivo13,14,15.
Research in flies, mice, rats and zebrafish revealed several evolutionarily conserved and essential mediators of axon death signaling8. Axon death mutants contain severed axons and synapses that fail to undergo axon death; they remain morphologically and functionally preserved for weeks, in the absence of cell body support9,10,12,13,16,17,18,19,20,21,22,23. The discovery and characterization of these mediators led to the definition of a molecular pathway executing axon death. Importantly, axon death signaling is activated not only when the axon is cut, crushed or stretched24,25; it also seems to be a contributor in distinct animal models of neurological conditions (e.g., where axons degenerate in an injury-independent manner4, yet with a range of beneficial outcomes4,8). Therefore, understanding how axon death executes axon degeneration after injury might offer insights beyond a simple injury model; it could also provide targets for therapeutic intervention.
The fruit fly Drosophila melanogaster (Drosophila) has proven to be an invaluable system for axon death signaling. Research in the fly revealed four essential evolutionarily conserved axon death genes: highwire (hiw)11,14, dnmnat12,26, dsarm10 and axundead (axed)12. The modification of these mediators &#8212; loss-of-function mutations of hiw, dsarm and axed, and over-expression of dnmnat &#8212; potently blocks axon death for the life span of the fly. While severed wild type axons undergo axon death within 1 day, severed axons and their synapses lacking hiw, dsarm or axed remain not only morphologically, but also functionally preserved for weeks. Whether functional preservation can also be achieved through high levels of dnmnat remains to be determined.
Here, we will present three simple and recently developed protocols to study axon death (e.g., the morphology and function of severed axons and their synapses over time) in the absence of cell body support. We demonstrate how attenuated axon death results in severed axons which are morphologically preserved with a hiw loss-of-function mutation (hiw&#8710;N) and how attenuated axon death results in severed axons and synapses that remain functionally preserved for at least 7 days with over-expression of dnmnat (dnmnatOE). These protocols allow for the observation of individual axonal and synaptic morphology either in the central, or peripheral nervous system (CNS and PNS, respectively)13,14, while the functional preservation of severed axons and their synapses in the CNS can be visualized by the use of a simple optogenetic setup combined with grooming as a behavioral readout12.

<table><tbody><tr><td>Tweezers (high precision, ultra fine)</td><td>EMS</td><td>78520-5</td><td>Antennal ablation</td></tr><tr><td>MicroPoint Scissors (5-mm cutting edge)</td><td>EMS</td><td>72933-04</td><td>Wing injury</td></tr><tr><td>1.5 mL microcentrifuge tube</td><td>Eppendorf</td><td>30120086.0000</td><td></td></tr><tr><td>35mm tissue culture dish</td><td>Sarstedt</td><td>83.3900</td><td></td></tr><tr><td>Cover Slips, Thickness 1</td><td>Thermo Scientific&amp;trade;</td><td>BB02400600A113MNT0</td><td></td></tr><tr><td>Superfrost Microscope Slides</td><td>Thermo Scientific&amp;trade;</td><td>AA00008032E00MNT10</td><td></td></tr><tr><td>High-Sensitivity USB 2.0 CMOS Camera, 1280 x 1024, Global Shutter</td><td>Thorlabs</td><td>DCC1240M</td><td>Camera setup</td></tr><tr><td>SM1 Retaining Ring for &amp;Oslash;1&quot; Lens Tubes and Mounts</td><td>Thorlabs</td><td>SM1RR</td><td></td></tr><tr><td>25mm 1/1.2&quot; C mount Lens</td><td>Tamron</td><td>M112FM25</td><td></td></tr><tr><td>Adapter with External M27 x 0.5 Threads and Internal SM1 Threads</td><td>Thorlabs</td><td>SM1A36</td><td></td></tr><tr><td>Aspheric Condenser Lens, &amp;Oslash;25 mm, f=20.1 mm, NA=0.60, ARC: 650-1050 nm</td><td>Thorlabs</td><td>ACL2520U-B</td><td></td></tr><tr><td>&amp;Oslash;25.0 mm Premium Longpass Filter, Cut-On Wavelength: 700 nm</td><td>Thorlabs</td><td>FELH0700</td><td></td></tr><tr><td>SM1 (1.035&quot;-40) Coupler, External Threads, 0.5&quot; Long</td><td>Thorlabs</td><td>SM1T2</td><td></td></tr><tr><td>SM1 Lens Tube Without External Threads, 1&quot; Long, Two Retaining Rings Included</td><td>Thorlabs</td><td>SM1M10</td><td></td></tr><tr><td>850 nm, 900 mW (Min) Mounted LED, 1200 mA</td><td>Thorlabs</td><td>M850L3</td><td>IR LED spotlight</td></tr><tr><td>SM1 (1.035&quot;-40) Coupler, External Threads, 0.5&quot; Long</td><td>Thorlabs</td><td>SM1T2</td><td></td></tr><tr><td>SM1 Lens Tube Without External Threads, 2&quot; Long, Two Retaining Rings Included</td><td>Thorlabs</td><td>SM1M20</td><td></td></tr><tr><td>Aspheric Condenser Lens, &amp;Oslash;25 mm, f=20.1 mm, NA=0.60, ARC: 650-1050 nm</td><td>Thorlabs</td><td>ACL2520U-B</td><td></td></tr><tr><td>&amp;Oslash;25.0 mm Premium Longpass Filter, Cut-On Wavelength: 850 nm</td><td>Thorlabs</td><td>FELH0850</td><td></td></tr><tr><td>SM1 Retaining Ring for &amp;Oslash;1&quot; Lens Tubes and Mounts</td><td>Thorlabs</td><td>SM1RR</td><td></td></tr><tr><td>660 nm, 940 mW (Min) Mounted LED, 1200 mA</td><td>Thorlabs</td><td>M660L4</td><td>Red LED spotlight</td></tr><tr><td>Aspheric Condenser Lens, &amp;Oslash;25 mm, f=20.1 mm, NA=0.60, ARC: 650-1050 nm</td><td>Thorlabs</td><td>ACL2520U-B</td><td></td></tr><tr><td>SM1 (1.035&quot;-40) Coupler, External Threads, 0.5&quot; Long</td><td>Thorlabs</td><td>SM1T2</td><td></td></tr><tr><td>SM1 Lens Tube Without External Threads, 2&quot; Long, Two Retaining Rings Included</td><td>Thorlabs</td><td>SM1M20</td><td></td></tr><tr><td>15 V, 2.4 A Power Supply Unit with 3.5 mm Jack Connector for One K- or T-Cube</td><td>Thorlabs</td><td>KPS101</td><td>LED control</td></tr><tr><td>T-Cube LED Driver, 1200 mA Max Drive Current</td><td>Thorlabs</td><td>LEDD1B</td><td></td></tr><tr><td>150 mm x 300 mm x 12.7 mm Aluminum Breadboard, M6 Double-Density Taps</td><td>Thorlabs</td><td>MB1530/M</td><td>Mount base</td></tr><tr><td>&amp;Oslash;12.7 mm Universal Post Holder, Spring-Loaded Locking Thumbscrew, L = 75 mm</td><td>Thorlabs</td><td>UPH75/M</td><td>Mount, 3x (IR LED, red LED, cam)</td></tr><tr><td>&amp;Oslash;1.20&quot; Slip Ring for SM1 Lens Tubes and C-Mount Extension Tubes, M4 Tap</td><td>Thorlabs</td><td>SM1RC/M</td><td></td></tr><tr><td>&amp;Oslash;12.7 mm Optical Post, SS, M4 Setscrew, M6 Tap, L = 150 mm</td><td>Thorlabs</td><td>TR150/M</td><td></td></tr><tr><td>&amp;Oslash;12.7 mm Optical Post, SS, M4 Setscrew, M6 Tap, L = 40 mm</td><td>Thorlabs</td><td>TR40/M</td><td></td></tr><tr><td>Right-Angle Clamp for &amp;Oslash;1/2&quot; Posts, 5 mm Hex</td><td>Thorlabs</td><td>RA90/M</td><td></td></tr><tr><td>M6 x 1.0 Stainless Steel Cap Screw, 16 mm Long, Pack of 25</td><td>Thorlabs</td><td>SH6MS16</td><td>screws for mount onto base</td></tr><tr><td>USB-6001 14-Bit 20 kS/s Multifunction I/O and NI-DAQmx</td><td>National Instruments</td><td>782604-01</td><td>Red LED spotlight controller</td></tr><tr><td>20k Ohm 1 Gang Linear Panel Mount Potentiometer</td><td>TT Electronics/BI</td><td>P230-2EC22BR20K</td><td>fintuner for indicator</td></tr><tr><td>IR (860nm) emitter, 100 mA radial</td><td>Osram</td><td>475-1365-ND</td><td>Red light indicator</td></tr><tr><td>cable</td><td>-</td><td>-</td><td>Misc</td></tr><tr><td>All-trans retinal</td><td>Sigma</td><td>R2625</td><td></td></tr><tr><td>Ethanol absolute</td><td>Vwr</td><td>20821.296</td><td></td></tr><tr><td>Halocarbon Oil 27</td><td>Sigma</td><td>H8773</td><td></td></tr><tr><td>Mowiol</td><td>Merk</td><td>81381</td><td></td></tr><tr><td>Paraformaldehyde</td><td>Sigma</td><td>F8775</td><td></td></tr><tr><td>Phosphate buffered saline (PBS)</td><td>Sigma</td><td>P5493</td><td></td></tr><tr><td>Sylgard 184 silicone elastomer base</td><td>Dow Corning Corp</td><td>4019862</td><td></td></tr><tr><td>Sylgard 184 silicone elastomer curing agent</td><td>Dow Corning Corp</td><td>4019862</td><td></td></tr><tr><td>Triton X-100</td><td>Sigma</td><td>T8787</td><td></td></tr><tr><td>Chicken anti-GFP antibodies</td><td>Rockland</td><td>600-901-215</td><td>Antibodies</td></tr><tr><td>Goat Dylight anti-Chicken</td><td>Abcam</td><td>ab96947</td><td></td></tr><tr><td>FM7a, B</td><td>BDSC</td><td>RRID:BDSC_785</td><td>&lt;strong&gt;X chromosome&lt;/strong&gt;</td></tr><tr><td>FRT19A[hs-neo]</td><td>BDSC</td><td>RRID:BDSC_1709</td><td></td></tr><tr><td>hiw[&amp;Delta;N]</td><td>BDSC</td><td>RRID:BDSC_51637</td><td></td></tr><tr><td>hs-FLP[12]</td><td>BDSC</td><td>RRID:BDSC_1929</td><td></td></tr><tr><td>tub-Gal80[LL1]</td><td>BDSC</td><td>RRID:BDSC_5132</td><td></td></tr><tr><td>w[1118]</td><td>BDSC</td><td>RRID:BDSC_3605</td><td></td></tr><tr><td>20xUAS-IVS-CsChrimson::mVenus</td><td>BDSC</td><td>RRID:BDSC_55135</td><td>&lt;strong&gt;2nd chromosome&lt;/strong&gt;</td></tr><tr><td>5xUAS-Gal4[12B]</td><td>Kyoto</td><td>RRID:Kyoto_108492</td><td></td></tr><tr><td>5xUAS-HA::dnmnat</td><td>BDSC</td><td>RRID:BDSC_39702</td><td></td></tr><tr><td>5xUAS-mCD8::GFP[LL5]</td><td>BDSC</td><td>RRID:BDSC_5134</td><td></td></tr><tr><td>ase-FLP[2d]</td><td>Freeman laboratory</td><td>Neukomm et al., 2014 (PNAS)</td><td></td></tr><tr><td>CyO</td><td>BDSC</td><td>RRID:BDSC_2555</td><td></td></tr><tr><td>dpr1-Gal4</td><td>BDSC</td><td>RRID:BDSC_25083</td><td></td></tr><tr><td>OR22a-Gal4</td><td>BDSC</td><td>RRID:BDSC_9952</td><td></td></tr><tr><td>ey-FLP[6]</td><td>BDSC</td><td>RRID:BDSC_5577</td><td>&lt;strong&gt;3rd chromosome&lt;/strong&gt;</td></tr><tr><td>GMR60E02-Gal4</td><td>BDSC</td><td>RRID:BDSC_39250</td><td></td></tr><tr><td>TM3,Sb,e</td><td>BDSC</td><td>RRID:BDSC_3644</td><td></td></tr></tbody></table>

morphological and functional evaluation of axons and their synapses during axon death in drosophila melanogaster

Axon degeneration is a shared feature in neurodegenerative disease and when nervous systems are challenged by mechanical or chemical forces. However, our understanding of the molecular mechanisms underlying axon degeneration remains limited. Injury-induced axon degeneration serves as a simple model to study how severed axons execute their own disassembly (axon death). Over recent years, an evolutionarily conserved axon death signaling cascade has been identified from flies to mammals, which is required for the separated axon to degenerate after injury. Conversely, attenuated axon death signaling results in morphological and functional preservation of severed axons and their synapses. Here, we present three simple and recently developed protocols that allow for the observation of axonal morphology, or axonal and synaptic function of severed axons that have been cut-off from the neuronal cell body, in the fruit fly Drosophila. Morphology can be observed in the wing, where a partial injury results in axon death side-by-side of uninjured control axons within the same nerve bundle. Alternatively, axonal morphology can also be observed in the brain, where the whole nerve bundle undergoes axon death triggered by antennal ablation. Functional preservation of severed axons and their synapses can be assessed by a simple optogenetic approach coupled with a post-synaptic grooming behavior. We present examples using a highwire loss-of-function mutation and by over-expressing dnmnat, both capable of delaying axon death for weeks to months. Importantly, these protocols can be used beyond injury; they facilitate the characterization of neuronal maintenance factors, axonal transport, and axonal mitochondria.

Above, we described three methods to study the morphology and function of severed axons and their synapses. The first method allows for high-resolution observation of individual axons in the PNS. It requires clones generated by the MARCM technique14,31. Here, we performed crosses to generate wild type and highwire mutant MARCM clones (Figure 4A). A simple cut in the middle of the wing induces axon injury of neurons housed distal (e.g., at the outer side of the wing), while proximal neurons (e.g., between the cut site and the thorax) remain uninjured. This approach makes it feasible to observe axon death side-by-side of uninjured control axons in the same nerve bundle (Figure 1A, Figure 4B). Here, we used a genetic background resulting in low numbers of GFP-labeled clones (e.g., two in each experiment14). We present examples of 1 and 7 days after injury of wild type axons, to provide examples of control axons, axons undergoing axon death, and axonal fragments being cleared by surrounding glia, respectively. In addition, we repeated axonal injury in highwire mutants where we analyzed the outcome 7 days after injury.
Uninjured control wings harbor two wild-type clones, thus two GFP-labeled wild-type axons (Figure 4B, wild type, uninjured control). One day after cutting the middle of the wing by the use of micro scissors, axon death is induced in GFP-labeled axons where cell bodies are distal to the cut site, while axons from proximally housed cell bodies serve as an internal control within the same nerve bundle (Figure 4B, wild type, 1 day post injury). Note the axonal debris trace in the upper part indicated by the arrow. 7 days after axonal injury, GFP-labeled axonal debris is cleared by surrounding glia, while GFP labeled uninjured control axons remain in the nerve bundle (Figure 4B, wild type, 7 days post injury, arrow). In contrast, highwire mutant axons that have been severed for 7 days remain morphologically preserved, consistent with previous findings11,14 (Figure 4B, highwire, 7 days post injury, arrow). These results demonstrate the powerful visual resolution of the Drosophila wing. Axon death can be observed side-by-side of uninjured controls in the same nerve bundle. While wild-type axons undergo axon death within 1 day after injury and the resulting debris is cleared within 7 days, axon death deficient highwire mutants remain morphologically preserved for 7 days.
<img alt="Figure 4" class="xfigimg" src="/files/ftp_upload/60865/60865fig04.jpg" /> 
Figure 4: Approach to study axon death of GFP-labeled sensory neuron axons in the wing. (A) Schematic crosses to generate wild type and highwire clones in the wing (P0 and F1 generation, respectively). Virgin females are on the left, males on the right. See Table of Materials for genotype details. (B) Examples of control and injured GFP-labeled axons. The field of view is indicated in (Figure 1A). From left to right: uninjured wild type control axons, wild type axons 1-day post injury, wild type axons 7 days post injury, highwire mutant axons 7 days post injury, respectively. Arrows indicate severed axons, Scale bar = 5 &#181;m. <a href="https://jove.unicartagenaproxy.elogim.com/files/ftp_upload/60865/60865fig04large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
The second method describes how to visualize whole axon bundles projecting into the CNS where they form synapses, which belong to neurons housed in both left and right antennae (Figure 2A-C). Here, we performed crosses to generate wild type and highwire mutant MARCM clones (Figure 5A). Uninjured, GFP-labeled axons and their synapses can be visualized over the course of days to weeks, in the absence of injury (Figure 5B, Wild type, uninjured control). Alternatively, animals can be subjected to 3rd antennal segment ablation, and severed GFP-labeled axons and their synapses can be observed during a time course over hours to days. We focused on 7 days after antennal ablation, because at this time point, axons and their synapses have undergone axon death, and resulting debris is cleared by surrounding glia. If unilateral ablation of the right antenna is performed, then the right axon bundle is severed and will disassemble and the resulting debris is fully cleared 7 days after injury (Figure 5B, wild type, unilateral ablation, 7 days post injury, arrows), consistent with previous findings13. Alternatively, both the right and the left antennae can be ablated, which will sever both axon bundles, and 7 days after injury, axons and their synapses disappeared (Figure 5B, wild type, bilateral ablation, 7 days post injury, arrow). In contrast, unilateral ablation of the right antennae in highwire mutants results in severed axons that remain preserved 7 days post injury, consistent with previous findings11,14 (Figure 5B, highwire, unilateral ablation, 7 days post injury, arrow). These results demonstrate that severed wild-type axons undergo axon death and the resulting debris is cleared within 7 days, while axon death deficient highwire mutants fail to undergo axon death and remain morphologically preserved for 7 days.
<img alt="Figure 5" class="xfigimg" src="/files/ftp_upload/60865/60865fig05.jpg" /> 
Figure 5: Approach to study axon death of GFP-labeled sensory neuron axons in the brain. (A) Schematic crosses to generate wild type and highwire clones in the brain (P0 and F1 generation, respectively). Virgin females are on the left, males on the right. See Table of Materials for genotype details. (B) Examples of control and injured GFP-labeled axons. From left to right: uninjured wild type controls, wild type 7 days post unilateral antennal ablation, wild type 7 days post bilateral antennal ablation, and highwire mutants 7 days post unilateral antennal ablation, respectively. Arrows indicate severed axon bundles, Scale bar = 10 &#181;m. <a href="https://jove.unicartagenaproxy.elogim.com/files/ftp_upload/60865/60865fig05large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
The third method allows for the observation of functional preservation of severed axons and their synapses in the CNS. It relies on the manipulation of a subset of JO neurons housed in the 2nd antennal segment which are sufficient to induce antennal grooming. Expression of a red-shifted channelrhodopsin (CsChrimson) in JO neurons, combined with dietary supplementation of all trans-retinal, is sufficient to elicit a simple post-synaptic grooming behavior upon red light exposure12,30. Here, we performed crosses to generate wild type JO neurons, and JO neurons over-expressing dnmnat (dnmnatOE) (Figure 6A). Wild type flies or flies containing JO neurons with attenuated axon death (dnmnatOE), both harbor a potent grooming behavior before injury. However, 7 days post injury (e.g., bilateral ablation of the 2nd antennal segment), grooming fails to be elicited by optogenetics in wild type flies due to injury-induced axon and synapse degeneration, while animals with attenuated axon death continue to groom (Figure 6B, Movie 1,2). Attenuated axon death is therefore capable of functionally preserving severed axons and their synapses for 7 days.
<img alt="Figure 6" class="xfigimg" src="/files/ftp_upload/60865/60865fig06.jpg" /> 
Figure 6: Approach to visualize axonal and synaptic function after axotomy. (A) Schematic crosses to generate wild type and dnmnat over-expressing JO sensory neurons (P0 and F1 generation, respectively). Virgin females are on the left, males on the right. See Table of Materials for genotype details. (B) Individual ethograms of grooming behavior induced by optogenetics. Top: individual ethograms of wild type flies before and 7 days after injury (blue). Bottom: individual ethograms of flies over-expressing dnmnat (dnmnatOE) in JO neurons before and 7 days after injury (red). Each bin indicates at least 1 grooming behavior within 1 s. The black line indicates the sum of all bins. (C) Quantification of grooming behavior. Data is shown as average &#177; standard deviation, p &#62; 0.001 (one-way ANOVA, multiple comparison with Tukey&#39;s post hoc test). <a href="https://jove.unicartagenaproxy.elogim.com/files/ftp_upload/60865/60865fig06large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
Movie 1: Representative wild type grooming behavior elicited by optogenetics before and 7 days after antennal ablation. <a href="https://cloudflare.jove.com/files/ftp_upload/60865/Movie_1_wild_type.mp4" target="_blank">Please click here to download this video.</a>
Movie 2: Representative grooming behavior elicited by optogenetics in flies over-expressing dnmnat in JO neurons before and 7 days after antennal ablation. <a href="https://cloudflare.jove.com/files/ftp_upload/60865/Movie_2_nmnat.mp4" target="_blank">Please click here to download this video.</a>

Watch this Scientific Journal Video about Morphological and Functional Evaluation of Axons and their Synapses during Axon Death in Drosophila melanogaster at JoVE.com

Morphological and Functional Evaluation of Axons and their Synapses during Axon Death in Drosophila melanogaster

Here, we provide protocols to perform three simple injury-induced axon degeneration (axon death) assays in Drosophila melanogaster to evaluate the morphological and functional preservation of severed axons and their synapses.

Morphological and Functional Evaluation of Axons and their Synapses during Axon Death in Drosophila melanogaster

Axon degeneration is a shared feature in neurodegenerative disease and when nervous systems are challenged by mechanical or chemical forces. However, our ...

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Research

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Neuroscience

7.8K Views.  University of Lausanne. Here, we provide protocols to perform three simple injury-induced axon degeneration (axon death) assays in Drosophila melanogaster to evaluate the morphological and functional preservation of severed axons and their synapses.

Video: Morphological and Functional Evaluation of Axons and their Synapses during Axon Death in Drosophila melanogaster

In vivo Visualization of Synaptic Vesicles Within Drosophila Larval Segmental Axons

Elucidating the mechanisms of axonal transport has shown to be very important in determining how defects in long distance transport affect different neurological diseases. Defects in this essential process can have detrimental effects on neuronal functioning and development. We have developed a dissection protocol that is designed to expose the Drosophila larval segmental nerves to view axonal transport in real time. We have adapted this protocol for live imaging from the one published by Hurd and Saxton (1996) used for immunolocalizatin of larval segmental nerves. Careful dissection and proper buffer conditions are critical for maximizing the lifespan of the dissected larvae. When properly done, dissected larvae have shown robust vesicle transport for 2-3 hours under physiological conditions. We use the UAS-GAL4 method 1 to express GFP-tagged APP or synaptotagmin vesicles within a single axon or many axons in larval segmental nerves by using different neuronal GAL4 drivers. Other fluorescently tagged markers, for example mitochrondria (MitoTracker) or lysosomes (LysoTracker), can be also applied to the larvae before viewing. GFP-vesicle movement and particle movement can be viewed simultaneously using separate wavelengths.

In vivo Visualization of Synaptic Vesicles Within Drosophila Larval Segmental Axons

This protocol discusses the live dissection of Drosophila larvae for the purpose of imaging the movement of GFP tagged axonal vesicles on microtubule tracks.

Elucidating the mechanisms of axonal transport has shown to be very important in determining how defects in long distance transport affect different ...

Morphological Analysis of Drosophila Larval Peripheral Sensory Neuron Dendrites and Axons Using Genetic Mosaics

Nervous system development requires the correct specification of neuron position and identity, followed by accurate neuron class-specific dendritic development and axonal wiring. Recently the dendritic arborization (DA) sensory neurons of the Drosophila larval peripheral nervous system (PNS) have become powerful genetic models in which to elucidate both general and class-specific mechanisms of neuron differentiation.
There are four main DA neuron classes (I-IV)1. They are named in order of increasing dendrite arbor complexity, and have class-specific differences in the genetic control of their differentiation2-10. The DA sensory system is a practical model to investigate the molecular mechanisms behind the control of dendritic morphology11-13 because: 1) it can take advantage of the powerful genetic tools available in the fruit fly, 2) the DA neuron dendrite arbor spreads out in only 2 dimensions beneath an optically clear larval cuticle making it easy to visualize with high resolution in vivo, 3) the class-specific diversity in dendritic morphology facilitates a comparative analysis to find key elements controlling the formation of simple vs. highly branched dendritic trees, and 4) dendritic arbor stereotypical shapes of different DA neurons facilitate morphometric statistical analyses.
DA neuron activity modifies the output of a larval locomotion central pattern generator14-16. The different DA neuron classes have distinct sensory modalities, and their activation elicits different behavioral responses14,16-20. Furthermore different classes send axonal projections stereotypically into the Drosophila larval central nervous system in the ventral nerve cord (VNC)21. These projections terminate with topographic representations of both DA neuron sensory modality and the position in the body wall of the dendritic field7,22,23. Hence examination of DA axonal projections can be used to elucidate mechanisms underlying topographic mapping7,22,23, as well as the wiring of a simple circuit modulating larval locomotion14-17.
We present here a practical guide to generate and analyze genetic mosaics24 marking DA neurons via MARCM (Mosaic Analysis with a Repressible Cell Marker)1,10,25 and Flp-out22,26,27 techniques (summarized in Fig. 1).

Morphological Analysis of Drosophila Larval Peripheral Sensory Neuron Dendrites and Axons Using Genetic Mosaics

The dendritic arborization sensory neurons of the Drosophila larval peripheral nervous system are useful models to elucidate both general and neuron class-specific mechanisms of neuron differentiation. We present a practical guide to generate and analyze dendritic arborization neuron genetic mosaics.

Nervous system development requires the correct specification of neuron position and identity, followed by accurate neuron class-specific dendritic ...

Using Microfluidics Chips for Live Imaging and Study of Injury Responses in Drosophila Larvae

Live imaging is an important technique for studying cell biological processes, however this can be challenging in live animals. The translucent cuticle of the Drosophila larva makes it an attractive model organism for live imaging studies. However, an important challenge for live imaging techniques is to noninvasively immobilize and position an animal on the microscope. This protocol presents a simple and easy to use method for immobilizing and imaging Drosophila larvae on a polydimethylsiloxane (PDMS) microfluidic device, which we call the 'larva chip'. The larva chip is comprised of a snug-fitting PDMS microchamber that is attached to a thin glass coverslip, which, upon application of a vacuum via a syringe, immobilizes the animal and brings ventral structures such as the nerve cord, segmental nerves, and body wall muscles, within close proximity to the coverslip. This allows for high-resolution imaging, and importantly, avoids the use of anesthetics and chemicals, which facilitates the study of a broad range of physiological processes. Since larvae recover easily from the immobilization, they can be readily subjected to multiple imaging sessions. This allows for longitudinal studies over time courses ranging from hours to days. This protocol describes step-by-step how to prepare the chip and how to utilize the chip for live imaging of neuronal events in 3rd instar larvae. These events include the rapid transport of organelles in axons, calcium responses to injury, and time-lapse studies of the trafficking of photo-convertible proteins over long distances and time scales. Another application of the chip is to study regenerative and degenerative responses to axonal injury, so the second part of this protocol describes a new and simple procedure for injuring axons within peripheral nerves by a segmental nerve crush.

Using Microfluidics Chips for Live Imaging and Study of Injury Responses in Drosophila Larvae

Drosophila larvae are an attractive model system for live imaging due to their translucent cuticle and powerful genetics. This protocol describes how to utilize a single-layer PDMS device, called the &#39;larva chip&#39; for live imaging of cellular processes within neurons of 3rd instar Drosophila larvae.

Live imaging is an important technique for studying cell biological processes, however this can be challenging in live animals. The translucent cuticle of ...

Bioengineering

Dissection and Immunofluorescent Staining of Mushroom Body and Photoreceptor Neurons in Adult Drosophila melanogaster Brains

Nervous system development involves a sequential series of events that are coordinated by several signaling pathways and regulatory networks. Many of the proteins involved in these pathways are evolutionarily conserved between mammals and other eukaryotes, such as the fruit fly Drosophila melanogaster, suggesting that similar organizing principles exist during the development of these organisms. Importantly, Drosophila has been used extensively to identify cellular and molecular mechanisms regulating processes that are required in mammals including neurogenesis, differentiation, axonal guidance, and synaptogenesis. Flies have also been used successfully to model a variety of human neurodevelopmental diseases. Here we describe a protocol for the step-by-step microdissection, fixation, and immunofluorescent localization of proteins within the adult Drosophila brain. This protocol focuses on two example neuronal populations, mushroom body neurons and retinal photoreceptors, and includes optional steps to trace individual mushroom body neurons using Mosaic Analysis with a Repressible Cell Marker (MARCM) technique. Example data from both wild-type and mutant brains are shown along with a brief description of a scoring criteria for axonal guidance defects. While this protocol highlights two well-established antibodies for investigating the morphology of mushroom body and photoreceptor neurons, other Drosophila brain regions and the localization of proteins within other brain regions can also be investigated using this protocol.

Dissection and Immunofluorescent Staining of Mushroom Body and Photoreceptor Neurons in Adult Drosophila melanogaster Brains

This protocol describes the dissection and immunostaining of adult Drosophila melanogaster brain tissues. Specifically, this protocol highlights the use of Drosophila mushroom body and photoreceptor neurons as example neuronal subsets that can be accurately used to uncover general principles underlying many aspects of neuronal development.

Nervous system development involves a sequential series of events that are coordinated by several signaling pathways and regulatory networks. Many of the ...

Developmental Biology

Labeling of Single Cells in the Central Nervous System of Drosophila melanogaster

In this article we describe how to individually label neurons in the embryonic CNS of Drosophila melanogaster by juxtacellular injection of the lipophilic fluorescent membrane marker DiI. This method allows the visualization of neuronal cell morphology in great detail. It is possible to label any cell in the CNS: cell bodies of target neurons are visualized under DIC optics or by expression of a fluorescent genetic marker such as GFP. After labeling, the DiI can be transformed into a permanent brown stain by photoconversion to allow visualization of cell morphology with transmitted light and DIC optics. Alternatively, the DiI-labeled cells can be observed directly with confocal microscopy, enabling genetically introduced fluorescent reporter proteins to be colocalised. The technique can be used in any animal, irrespective of genotype, making it possible to analyze mutant phenotypes at single cell resolution.

Labeling of Single Cells in the Central Nervous System of Drosophila melanogaster

We present a technique for labeling single neurons in the central nervous system (CNS) of Drosophila embryos, which allows the analysis of neuronal morphology by either transmitted light or confocal microscopy.

In this  article we describe how to individually label neurons in the embryonic CNS of Drosophila melanogaster by juxtacellular injection of the ...

Mass Histology to Quantify Neurodegeneration in Drosophila

Progressive neurodegenerative diseases like Alzheimer&#39;s disease (AD) or Parkinson&#39;s disease (PD) are an increasing threat to human health worldwide. Although mammalian models have provided important insights into the underlying mechanisms of pathogenicity, the complexity of mammalian systems together with their high costs are limiting their use. Therefore, the simple but well-established Drosophila model-system&#160;provides an alternative for investigating the molecular pathways that are affected in these diseases. Besides behavioral deficits, neurodegenerative diseases are characterized by histological phenotypes such as neuronal death and axonopathy. To quantify neuronal degeneration and to determine how it is affected by genetic and environmental factors, we use a histological approach that is based on measuring the vacuoles in adult fly brains. To minimize the effects of systematic error and to directly compare sections from control and experimental flies in one preparation, we use the &#39;collar&#39; method for paraffin sections. Neurodegeneration is then assessed by measuring the size and/or number of vacuoles that have developed in the fly brain. This can either be done by focusing on a specific region of interest or by analyzing the entire brain by obtaining serial sections that span the complete head. Therefore, this method allows one to measure not only severe degeneration but also relatively mild phenotypes that are only detectable in a few sections, as occurs during normal aging.

Mass Histology to Quantify Neurodegeneration in Drosophila

Drosophila is widely used as a model system to study neurodegeneration. This protocol describes a method by which degeneration, as determined by vacuole formation in the brain, can be quantified. It also minimizes effects due to the experimental procedure by processing and sectioning control and experimental flies as one sample.

Progressive neurodegenerative diseases like Alzheimer&#39;s disease (AD) or Parkinson&#39;s disease (PD) are an increasing threat to human health ...

Visualization of the Axonal Projection Pattern of Embryonic Motor Neurons in Drosophila

The establishment of functional neuromuscular circuits relies on precise connections between developing motor axons and target muscles. Motor neurons extend growth cones to navigate along specific pathways by responding to a large number of axon guidance cues that emanate from the surrounding extracellular environment. Growth cone target recognition also plays a critical role in neuromuscular specificity. This work presents a standard immunohistochemistry protocol to visualize motor neuron projections of late stage-16 Drosophila melanogaster embryos. This protocol includes a few key steps, including a genotyping procedure, to sort the desired mutant embryos; an immunostaining procedure, to tag embryos with fasciclin II (FasII) antibody; and a dissection procedure, to generate filleted preparations from fixed embryos. Motor axon projections and muscle patterns in the periphery are much better visualized in flat preparations of filleted embryos than in whole-mount embryos. Therefore, the filleted preparation of fixed embryos stained with FasII antibody provides a powerful tool to characterize the genes required for motor axon pathfinding and target recognition, and it can also be applied to both loss-of-function and gain-of-function genetic screens.

Visualization of the Axonal Projection Pattern of Embryonic Motor Neurons in Drosophila

This work details a standard immunohistochemistry method to visualize motor neuron projections of late stage-16 Drosophila melanogaster embryos. The filleted preparation of fixed embryos stained with FasII antibody provides a powerful tool to characterize the genes required for motor axon pathfinding and target recognition during neural development.

The establishment of functional neuromuscular circuits relies on precise connections between developing motor axons and target muscles. Motor neurons ...

A Simple Neuronal Mechanical Injury Methodology to Study Drosophila Motor Neuron Degeneration

The degeneration of neurons occurs during normal development and in response to injury, stress, and disease. The cellular hallmarks of neuronal degeneration are remarkably similar in humans and invertebrates as are the molecular mechanisms that drive these processes. The fruit fly, Drosophila melanogaster, provides a powerful yet simple genetic model organism to study the cellular complexities of neurodegenerative diseases. In fact, approximately 70% of disease-associated human genes have a Drosophila homolog and a plethora of tools and assays have been described using flies to study human neurodegenerative diseases. More specifically the neuromuscular junction (NMJ) in Drosophila has proven to be an effective system to study neuromuscular diseases because of the ability to analyze the structural connections between the neuron and the muscle. Here, we report on an in vivo motor neuron injury assay in Drosophila, which reproducibly induces neurodegeneration at the NMJ by 24 h. Using this methodology, we have described a temporal sequence of cellular events resulting in motor neuron degeneration. The injury method has diverse applications and has also been utilized to identify specific genes required for neurodegeneration and to dissect transcriptional responses to neuronal injury.

A Simple Neuronal Mechanical Injury Methodology to Study Drosophila Motor Neuron Degeneration

Here we describe a simple and widely accessible method to injure segmental nerves in Drosophila larvae to visualize and quantify neurodegeneration of motor neurons at the neuromuscular junction (NMJ) of third instar larvae.

The degeneration of neurons occurs during normal development and in response to injury, stress, and disease. The cellular hallmarks of neuronal ...

A Drosophila In Vivo Injury Model for Studying Neuroregeneration in the Peripheral and Central Nervous System

The regrowth capacity of damaged neurons governs neuroregeneration and functional recovery after nervous system trauma. Over the past few decades, various intrinsic and extrinsic inhibitory factors involved in the restriction of axon regeneration have been identified. However, simply removing these inhibitory cues is insufficient for successful regeneration, indicating the existence of additional regulatory machinery. Drosophila melanogaster, the fruit fly, shares evolutionarily conserved genes and signaling pathways with vertebrates, including humans. Combining the powerful genetic toolbox of flies with two-photon laser axotomy/dendriotomy, we describe here the Drosophila sensory neuron &#8211; dendritic arborization (da) neuron injury model as a platform for systematically screening for novel regeneration regulators. Briefly, this paradigm includes a) the preparation of larvae, b) lesion induction to dendrite(s) or axon(s) using a two-photon laser, c) live confocal imaging post-injury and d) data analysis. Our model enables highly reproducible injury of single labeled neurons, axons, and dendrites of well-defined neuronal subtypes, in both the peripheral and central nervous system.

A Drosophila In Vivo Injury Model for Studying Neuroregeneration in the Peripheral and Central Nervous System

Here, we present a protocol using the Drosophila sensory neuron - dendritic arborization (da) neuron injury model, which combines in vivo live imaging, two-photon laser axotomy/dendriotomy, and the powerful fly genetic toolbox, as a platform for screening potential promoters and inhibitors of neuroregeneration.

The regrowth capacity of damaged neurons governs neuroregeneration and functional recovery after nervous system trauma. Over the past few decades, various ...

Medicine

Visualizing Synaptic Degeneration in Adult Drosophila in Association with Neurodegeneration

Drosophila serves as a useful model for assessing synaptic structure and function associated with neurodegenerative diseases. While much work has focused on neuromuscular junctions (NMJs) in Drosophila larvae, assessing synaptic integrity in adult Drosophila has received much less attention. Here we provide a straightforward method for dissection of the dorsal longitudinal muscles (DLMs), which are required for flight ability. In addition to flight as a behavioral readout, this dissection allows for the both DLM synapses and muscle tissue to be amenable to structural analysis using fluorescently labeled antibodies for synaptic markers or proteins of interest. This protocol allows for the evaluation of the structural integrity of synapses in adult Drosophila during aging to model the progressive, age-dependent nature of most neurodegenerative diseases.

Visualizing Synaptic Degeneration in Adult Drosophila in Association with Neurodegeneration

The goal of this procedure is to dissect the dorsal longitudinal muscle (DLM) tissue to assess the structural integrity of DLM neuromuscular junctions (NMJs) in neurodegenerative disease models using Drosophila melanogaster.

Drosophila serves as a useful model for assessing synaptic structure and function associated with neurodegenerative diseases. While much work has focused ...

Morphological and Functional Evaluation of Axons and their Synapses during Axon Death in Drosophila melanogaster

Summary

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Chapters in this video

In vivo Visualization of Synaptic Vesicles Within Drosophila Larval Segmental Axons

Morphological Analysis of Drosophila Larval Peripheral Sensory Neuron Dendrites and Axons Using Genetic Mosaics

Using Microfluidics Chips for Live Imaging and Study of Injury Responses in Drosophila Larvae

Dissection and Immunofluorescent Staining of Mushroom Body and Photoreceptor Neurons in Adult Drosophila melanogaster Brains

Labeling of Single Cells in the Central Nervous System of Drosophila melanogaster

Mass Histology to Quantify Neurodegeneration in Drosophila

Visualization of the Axonal Projection Pattern of Embryonic Motor Neurons in Drosophila

A Simple Neuronal Mechanical Injury Methodology to Study Drosophila Motor Neuron Degeneration

A Drosophila In Vivo Injury Model for Studying Neuroregeneration in the Peripheral and Central Nervous System

Visualizing Synaptic Degeneration in Adult Drosophila in Association with Neurodegeneration