Samantha Khoury e Pamela Ajuyah sono supportati dalla Australian Postgraduate Award. Vorremmo inoltre ringraziare il Translational Cancer Research Network, Lowy Centro di Ricerca sul Cancro, Università del New South Wales e l&#39;Unità di ricerca sul cancro del Nord traslazionale per il loro sostegno supplementare di Samantha Khoury.

Nota: campioni di siero umano da pazienti sani o pazienti con cancro sono stati ottenuti con il consenso informato ai sensi approvati i protocolli etici umani del Royal Prince Alfred Hospital di Sydney (numero di protocollo X10-0016 e HREC/10/RPAH/24) e l&#39;University of Technology, Sydney. I campioni di siero sono stati raccolti da pazienti prima dell&#39;intervento chirurgico da vari ospedali di Sydney e posti in stoccaggio a -80 ° C. 1. Small RNA Isolation da siero L&#39;RNA totale è stato preparato da siero umano utilizzando una versione modificata del protocollo LS Tri-Reagent RT. <ol><li> Scongelare campione di siero congelato su ghiaccio e poi il trasferimento di 400 ml di siero appena scongelato in una provetta etichettata. </li><li> Diluire il siero con 100 ml di RNasi libero H 2 O e aggiungere proteinasi K alla concentrazione di 1 mg / ml. </li><li> Incubare a 37 ° C per 20 minuti per consentire la digestione delle proteine ​​da proteinasi K. </li><li> To garantire la completa solubilizzazione, aggiungere 1,5 volte il suo volume di Tri-reagente RT LS e 100 ml di 4-bromoanisole. </li><li> Brevemente invertire l&#39;omogeneizzato, eseguire pipettaggio ripetitivo per 5 secondi e trasferire in una provetta etichettata 2 ml Heavy Phase Lock. </li><li> Centrifugare l&#39;omogeneizzato a 12.000 xg per 20 min a 4 ° C. </li><li> Decantare attentamente almeno 1 ml di soluzione acquosa risultante in una fiala LoBind DNA. L&#39;interfase organico e dovrebbe essere intrappolato sotto il gel bianco del tubo Phase Lock. </li><li> Aggiungere 5,0 ml di glicogeno (5 mg / ml) e 500 ml di isopropanolo al 100% alla soluzione acquosa, miscelare capovolgendolo, e incubare O / N a -20 ° C. </li><li> Seguendo O / N incubazione, centrifugare il campione per 20 minuti a 12.000 xg in una centrifuga 4 ° C. </li><li> Eliminare il surnatante limpido ed effettuare un giro &quot;flash&quot; per 2 min a 16.000 × g in un 4 ° C centrifuga. </li><li> Rimuovere con attenzione il chiaro solution circonda il pellet con una pipetta. </li><li> Lavare il pellet con 1 ml di etanolo al 70% e centrifugare a 10.000 xg per 10 min. Decantare la soluzione di lavaggio e ripetere la fase di lavaggio. </li></ol> 2. RNA Resuspension in Solution <ol><li> Risospendere il pellet in 10 ml di RNasi libero H 2 O, garantendo il pellet è completamente sciolto. Per assicurare che l&#39;RNA viene completamente solubilizzata il campione può essere riscaldata a 55 ° C per 5 min. Durante questo tempo, mescolare il campione con pipettaggio ripetuto. Per un rendimento RNA totale più alto, in comune due preparazioni di RNA dallo stesso paziente. </li><li> Quantificare l&#39;RNA risospeso con un UV-Vis spettrofotometro e valutare la qualità RNA utilizzando un bioanalizzatore 2100. Conservare i campioni di RNA aggregati a -80 ° C per uso nelle applicazioni a valle. </li></ol>

<ol>
	<li>Babu, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Monitoring+extraction+efficiency+of+small+RNAs+with+the+Agilent+2100+Bioanalyzer+and+the+Small+RNA+Kit.">Monitoring extraction efficiency of small RNAs with the Agilent 2100 Bioanalyzer and the Small RNA Kit.</a> Agilent Application Note. , (2010).</li><li>Tran, N., Hutvagner, G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Biogenesis+and+the+regulation+of+the+maturation+of+miRNAs.">Biogenesis and the regulation of the maturation of miRNAs.</a> Essays Biochem. 54, 17-28 (2013).</li><li>Chim, S. S., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Detection+and+characterization+of+placental+microRNAs+in+maternal+plasma.">Detection and characterization of placental microRNAs in maternal plasma.</a> Clin. Chem. 54, 482-490 (2008).</li><li>Lodes, M. J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Detection+of+cancer+with+serum+miRNAs+on+an+oligonucleotide+microarray.">Detection of cancer with serum miRNAs on an oligonucleotide microarray.</a> PLoS One. 4, (2009).</li><li>Chen, X., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Characterization+of+microRNAs+in+serum:+a+novel+class+of+biomarkers+for+diagnosis+of+cancer+and+other+diseases.">Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases.</a> Cell Res. 18, 997-1006 (2008).</li><li>Burgos, K. L., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Identification+of+extracellular+miRNA+in+human+cerebrospinal+fluid+by+next-generation+sequencing.">Identification of extracellular miRNA in human cerebrospinal fluid by next-generation sequencing.</a> RNA. 19, 712-722 (2013).</li><li>Chomczynski, P., Sacchi, N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Single-step+method+of+RNA+isolation+by+acid+guanidinium+thiocyanate-phenol-chloroform+extraction.">Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.</a> Anal. Biochem. 162, 156-159 (1987).</li><li>Zhang, X., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Alterations+in+miRNA+processing+and+expression+in+pleomorphic+adenomas+of+the+salivary+gland.">Alterations in miRNA processing and expression in pleomorphic adenomas of the salivary gland.</a> Int. J. Cancer. 124, 2855-2863 (2009).</li><li>Chomczynski, P., Sacchi, N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+single-step+method+of+RNA+isolation+by+acid+guanidinium+thiocyanate-phenol-chloroform+extraction:+twenty-something+years+on.">The single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction: twenty-something years on.</a> Nat. Protoc. 1, 581-585 (2006).</li><li>Kirschner, M. B., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Haemolysis+during+sample+preparation+alters+microRNA+content+of+plasma.">Haemolysis during sample preparation alters microRNA content of plasma.</a> PLoS One. 6, (2011).</li><li>Murphy, N. R., Hellwig, R. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Improved+nucleic+acid+organic+extraction+through+use+of+a+unique+gel+barrier+material.">Improved nucleic acid organic extraction through use of a unique gel barrier material.</a> Biotechniques. 21, 934-936 (1996).</li><li>Taylor, C. J., Satoor, S. N., Ranjan, A. K., Pereira e Cotta, M. V., Joglekar, M. V. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+protocol+for+measurement+of+noncoding+RNA+in+human+serum.">A protocol for measurement of noncoding RNA in human serum.</a> Experimental Diabetes Research. 2012, (2012).</li><li>Ichikawa, M., Akiyama, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+Combination+of+Extraction+Reagent+and+DNA+Microarray+That+Allows+for+the+Detection+of+Global+MiRNA+Profiles+from+Serum/Plasma.">A Combination of Extraction Reagent and DNA Microarray That Allows for the Detection of Global MiRNA Profiles from Serum/Plasma.</a> Methods Mol. Biol. 1024, 247-253 (2013).</li><li>Fromm, B., Harris, P. D., Bachmann, L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=MicroRNA+preparations+from+individual+monogenean+Gyrodactylus+salaris-a+comparison+of+six+commercially+available+totalRNA+extraction+kits.">MicroRNA preparations from individual monogenean Gyrodactylus salaris-a comparison of six commercially available totalRNA extraction kits.</a> BMC Res. Notes. 4, 217 (2011).</li><li>Li, Y., Kowdley, K. V. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Method+for+microRNA+isolation+from+clinical+serum+samples.">Method for microRNA isolation from clinical serum samples.</a> Anal. Biochem. 431, 69-75 (2012).</li><li>McAlexander, M. A., Phillips, M. J., Witwer, K. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Comparison+of+Methods+for+miRNA+Extraction+from+Plasma+and+Quantitative+Recovery+of+RNA+from+Cerebrospinal+Fluid.">Comparison of Methods for miRNA Extraction from Plasma and Quantitative Recovery of RNA from Cerebrospinal Fluid.</a> Frontiers in Genetics. 4, 83 (2013).</li><li>Kim, Y. K., Yeo, J., Kim, B., Ha, M., Kim, V. N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Short+structured+RNAs+with+low+GC+content+are+selectively+lost+during+extraction+from+a+small+number+of+cells.">Short structured RNAs with low GC content are selectively lost during extraction from a small number of cells.</a> Mol. Cell. 46, 893-895 (2012).</li></ol>

Non c&#39;è nulla da rivelare.

La popolazione dei microRNA costituisce circa il 0,4-0,5% del RNA totale ritrovate nel siero. Inoltre vi è anche un alto contenuto proteico trovato nel siero umano. Per migliorare RNA e ridurre proteine ​​e fenolo contamina abbiamo modificato il tradizionale approccio Chomczynski 9 con l&#39;aggiunta di diversi passaggi. L&#39;RNA totale è stato isolato dal siero utilizzando lo standard Tri-Reagent RT-LS (Centro di Ricerca Molecolare) tuttavia quando eseguite nel nostro labo...

Negli ultimi anni, c&#39;è stata una spinta crescente a scoprire nuovi biomarcatori per la diagnosi precoce delle malattie umane. Molta attenzione è stata focalizzata sull&#39;uso di piccoli RNA come microRNA 2 (miRNA o miR) come potenziali marcatori. Questi piccoli RNA sono presenti nei fluidi corporei come siero e studi hanno dimostrato che sono resistenti alla degradazione e sono stabili in un intervallo di variazione delle condizioni ambientali 3. Poiché questi miRNA caratteristiche, siero o circolanti sono il biomarcatore ideale 4, 5. Attualmente ci sono due approcci principali per l&#39;isolamento di piccoli RNA da fluidi biologici. Il primo approccio utilizza la tecnologia basata su colonne di impegnare ed eluire i piccoli RNA 6, mentre il secondo approccio utilizza il protocollo di lunga data con fenolo e guanidina tiocianato reagenti 7. Abbiamo sviluppato un efficace, semplice protocollo, senza colonne per isolare piccoli RNA da siero umano. L&#39;RNA isolato è immediatamentediatamente utilizzabili in applicazioni a valle, compresi gli array di oligonucleotidi di DNA e RNA sequenziamento. Questo protocollo è stato sviluppato perché eravamo di fronte a diversi problemi quando si utilizzano metodi basati fenolo-per isolare l&#39;RNA dal siero. L&#39;approccio tradizionale Chomczynski è spesso utilizzato nella maggior parte dei laboratori con una gamma di reagenti disponibili dalla maggior parte dei fornitori commerciali. Tuttavia, considerando la loro diffusione, non sono stati sviluppati orientamenti rigorosi per produrre costantemente RNA di alta qualità da fluidi corporei, in particolare sangue o siero. Problemi comuni associati con isolare RNA da siero comprendono basse rese di RNA e la contaminazione con reagenti utilizzati durante l&#39;isolamento, in particolare fenolo. Il nostro approccio elimina questi contaminanti fenolo per fornire RNA di alta qualità per l&#39;analisi a valle come la PCR quantitativa (qPCR) e RNA sequenziamento. Abbiamo inoltre testato questo RNA array miRNA.

<table border="0" cellpadding="0" cellspacing="0" style="width:852px;" width="851">
	<colgroup>
		<col />
		<col />
		<col />
		<col />
	</colgroup>
	<tbody>
		<tr height="22">
			<td height="22" style="height:22px;width:259px;">Name of the Material/Equipment&#160;</td>
			<td style="width:223px;">Company&#160;</td>
			<td style="width:123px;">Catalog Number&#160;</td>
			<td style="width:248px;">Comments/ Description (optional)&#160;</td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;width:259px;">Tri-Reagent RT LS</td>
			<td style="width:223px;">Molecular Research Centre, USA</td>
			<td style="width:123px;">TR 118</td>
			<td style="width:248px;">-</td>
		</tr>
		<tr height="26">
			<td height="26" style="height:26px;width:259px;">RNase free H20</td>
			<td style="width:223px;">GIBCO Invitrogen</td>
			<td style="width:123px;">10977-023</td>
			<td style="width:248px;">-</td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;width:259px;">Proteinase K&#160;</td>
			<td style="width:223px;">Finnzymes, Finland</td>
			<td style="width:123px;">EO0491</td>
			<td style="width:248px;">-</td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;width:259px;">Heavy Phaselock Tube</td>
			<td style="width:223px;">5PRIME</td>
			<td>2302830</td>
			<td style="width:248px;">2ml capacity</td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;width:259px;">DNA Lobind tube</td>
			<td style="width:223px;">Eppendorf</td>
			<td style="width:123px;">0030 108.078</td>
			<td style="width:248px;">1.5ml capacity</td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;width:259px;">Glycogen&#160;</td>
			<td style="width:223px;">Invitrogen, USA</td>
			<td style="width:123px;">10814-010</td>
			<td style="width:248px;">5mg/ml</td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;width:259px;">RNA grade Isopropanol&#160;</td>
			<td style="width:223px;">Sigma Aldrich, USA</td>
			<td style="width:123px;">I9516</td>
			<td style="width:248px;">100%</td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;width:259px;">Refrigerated Centrifuge</td>
			<td style="width:223px;">John Morris</td>
			<td style="width:123px;">-</td>
			<td style="width:248px;">-</td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;width:259px;">Nanodrop UV-Vis spectrophotometer</td>
			<td style="width:223px;">Thermo Fisher Scientific, USA</td>
			<td style="width:123px;">-</td>
			<td style="width:248px;">-</td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;width:259px;">RNA grade Ethanol</td>
			<td style="width:223px;">Sigma Aldrich, USA</td>
			<td style="width:123px;">E7023</td>
			<td style="width:248px;">70%</td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;width:259px;">Agilent 2100 Bioanalyser</td>
			<td style="width:223px;">Agilent, USA</td>
			<td style="width:123px;">-</td>
			<td style="width:248px;">-</td>
		</tr>
	</tbody>
</table>

isolation of small noncoding rnas from human serum

L&#39;analisi di RNA e la sua espressione è una caratteristica comune in molti laboratori. Di rilievo è la nascita di piccoli RNA come microRNA, che si trovano nelle cellule di mammifero. Questi piccoli RNA sono geni regolatori potenti che controllano le vie vitali come la crescita, lo sviluppo e la morte e molto interesse è stato rivolto al loro espressione nei fluidi corporei. Ciò è dovuto alla loro disregolazione in malattie umane come il cancro e il loro potenziale applicazione come biomarker sierici. Tuttavia, l&#39;analisi di espressione miRNA nel siero può essere problematico. Nella maggior parte dei casi la quantità di siero è limitante e siero contiene basse quantità di RNA totale, di cui piccoli RNA costituiscono solo 0,4-0,5% 1. Così l&#39;isolamento di una quantità sufficiente di RNA qualità dal siero è una sfida importante per i ricercatori di oggi. In questo documento tecnico, si dimostra un metodo che utilizza solo 400 ml di siero umano per ottenere RNA sufficiente sia per matrici di DNA o analisi qPCR. L&#39;unadvantages di questo metodo sono la sua semplicità e la capacità di produrre RNA di alta qualità. Non richiede colonne specializzati per la purificazione dei piccoli RNA e utilizza reagenti generali e hardware presenti nei laboratori comuni. Il nostro metodo si usa un blocco Gel Fase per eliminare la contaminazione fenolo mentre allo stesso tempo cedevole RNA di alta qualità. Abbiamo anche introdurre un ulteriore passo per rimuovere ulteriormente tutti gli agenti inquinanti durante la fase di isolamento. Questo protocollo è molto efficace per isolare rese di RNA totale fino a 100 ng / ml di siero ma può anche essere adattato per altri tessuti biologici.

Figura 1 rappresenta un tipico spettro UV / Vis di RNA isolato dal siero. Da questo profilo abbiamo notato contaminazione proteina a 280 nm con fenolo e contaminanti organici sia a 270 nm e 230 nm, rispettivamente. Residue guanidina tiocianato stato inoltre osservato a 260 nm. Per ridurre i contaminanti, una serie di passaggi di ottimizzazione hanno fatto la procedura RT-LS Tri-reagente standard. Abbiamo aggiunto 5 mg / ml di glicogeno di aumentare sia il rendimento totale RNA e ridurre la contaminazion...

Watch this Scientific Journal Video about Isolation of Small Noncoding RNAs from Human Serum at JoVE.com

Isolation of Small Noncoding RNAs from Human Serum

Questo protocollo descrive un metodo per l&#39;estrazione di piccoli RNA da siero umano. Abbiamo usato questo metodo per isolare microRNA da siero cancro per uso in matrici di DNA e anche singleplex PCR quantitativa. Il protocollo utilizza fenolo e guanidina tiocianato reagenti con modifiche a produrre RNA di alta qualità.

Isolamento dei Piccoli RNA non codificanti dal siero umano

The analysis of RNA and its expression is a common feature in many laboratories. Of significance is the emergence of small RNAs like microRNAs, which are ...

isolation-of-small-noncoding-rnas-from-human-serum

Universidad de Cartagena UDEC

Research

JoVE Journal

Biology

18.0K Views.  University of Technology, Sydney.  Questo protocollo descrive un metodo per l'estrazione di piccoli RNA da siero umano. Abbiamo usato questo metodo per isolare microRNA da siero cancro per uso in matrici di DNA e anche singleplex PCR quantitativa. Il protocollo utilizza fenolo e guanidina tiocianato reagenti con modifiche a produrre RNA di alta qualità. 

Video: Isolation of Small Noncoding RNAs from Human Serum

Neuronal Nuclei Isolation from Human Postmortem Brain Tissue

Neurons in the human brain become postmitotic largely during prenatal development, and thus maintain their nuclei throughout the full lifespan. However, little is known about changes in neuronal chromatin and nuclear organization during the course of development and aging, or in chronic neuropsychiatric disease. However, to date most chromatin and DNA based assays (other than FISH) lack single cell resolution. To this end, the considerable cellular heterogeneity of brain tissue poses a significant limitation, because typically various subpopulations of neurons are intermingled with different types of glia and other non-neuronal cells. One possible solution would be to grow cell-type specific cultures, but most CNS cells, including neurons, are ex vivo sustainable, at best, for only a few weeks and thus would provide an incomplete model for epigenetic mechanisms potentially operating across the full lifespan.  Here, we provide a protocol to extract and purify nuclei from frozen (never fixed) human postmortem brain. The method involves extraction of nuclei in hypotonic lysis buffer, followed by ultracentrifugation and immunotagging with anti-NeuN antibody. Labeled neuronal nuclei are then collected separately using fluorescence-activated sorting. This method should be applicable to any brain region in a wide range of species and suitable for chromatin immunoprecipitation studies with site- and modification-specific anti-histone antibodies, and for DNA methylation and other assays. 

The cellular heterogeneity of brain tissue poses a significant limitation for the study of epigenetic markings in chromatin because most assays lack single cell resolution. Neurons typically are intermingled with glia and other non-neuronal cells. We provide a protocol to extract and collect neuronal nuclei from human brain.

Nuclei di isolamento dal tessuto neuronale del cervello umano Postmortem

Neurons in the human brain become postmitotic largely during prenatal development, and thus maintain their nuclei throughout the full lifespan. However, ...

Ricerca

Biologia

Isolation of Stem Cells from Human Pancreatic Cancer Xenografts

Cancer stem cells (CSCs) have been identified in a growing number of malignancies and are functionally defined by their ability to undergo self-renewal and produce differentiated progeny1. These properties allow CSCs to recapitulate the original tumor when injected into immunocompromised mice. CSCs within an epithelial malignancy were first described in breast cancer and found to display specific cell surface antigen expression (CD44+CD24low/-)2. Since then, CSCs have been identified in an increasing number of other human malignancies using CD44 and CD24 as well as a number of other surface antigens. Physiologic properties, including aldehyde dehydrogenase (ALDH) activity, have also been used to isolate CSCs from malignant tissues3-5.
Recently, we and others identified CSCs from pancreatic adenocarcinoma based on
ALDH activity and the expression of the cell surface antigens CD44 and CD24, and CD1336-8. These highly tumorigenic populations may or may not be overlapping and display other functions. We found that ALDH+ and CD44+CD24+ pancreatic CSCs are similarly tumorigenic, but ALDH+ cells are relatively more invasive8. In this protocol we describe a method to isolate viable pancreatic CSCs from low-passage human
xenografts9. Xenografted tumors are harvested from mice and made into a single-cell suspension. Tissue debris and dead cells are separated from live cells and then stained using antibodies against CD44 and CD24 and using the ALDEFLUOR reagent,
a fluorescent substrate of ALDH10. CSCs are then isolated by fluorescence activated cell sorting. Isolated CSCs can then be used for analytical or functional assays requiring viable cells.

Cancer stem cells (CSCs) have been identified in a number of malignancies. In this protocol we describe a flow cytometric method utilizing aldehyde dehydrogenase activity and CD44 and CD24 expression to isolate CSCs from human pancreatic adenocarcinoma xenografts. These viable cells can then be used in functional and analytical studies.

Isolamento di cellule staminali da xenotrapianti di cancro pancreatico umano

Cancer stem cells (CSCs) have been identified in a growing number of malignancies and are functionally defined by their ability to undergo self-renewal ...

Isolation and Culture of Adult Epithelial Stem Cells from Human Skin

The homeostasis of all self-renewing tissues is dependent on adult stem cells. As undifferentiated stem cells undergo asymmetric divisions, they generate daughter cells that retain the stem cell phenotype and transit-amplifying cells (TA cells) that migrate from the stem cell niche, undergo rapid proliferation and terminally differentiate to repopulate the tissue.
Epithelial stem cells have been identified in the epidermis, hair follicle, and intestine as cells with a high in vitro proliferative potential and as slow-cycling label-retaining cells in vivo 1-3. Adult, tissue-specific stem cells are responsible for the regeneration of the tissues in which they reside during normal physiologic turnover as well as during times of stress 4-5. Moreover, stem cells are generally considered to be multi-potent, possessing the capacity to give rise to multiple cell types within the tissue 6. For example, rodent hair follicle stem cells can generate epidermis, sebaceous glands, and hair follicles 7-9. We have shown that stem cells from the human hair follicle bulge region exhibit multi-potentiality 10.
Stem cells have become a valuable tool in biomedical research, due to their utility as an in vitro system for studying developmental biology, differentiation, tumorigenesis and for their possible therapeutic utility. It is likely that adult epithelial stem cells will be useful in the treatment of diseases such as ectodermal dysplasias, monilethrix, Netherton syndrome, Menkes disease, hereditary epidermolysis bullosa and alopecias 11-13. Additionally, other skin problems such as burn wounds, chronic wounds and ulcers will benefit from stem cell related therapies 14,15. Given the potential for reprogramming of adult cells into a pluripotent state (iPS cells)16,17, the readily accessible and expandable adult stem cells in human skin may provide a valuable source of cells for induction and downstream therapy for a wide range of disease including diabetes and Parkinson's disease.

A rapid, robust way of isolating viable adult epithelial stem cells from human skin is described. The method utilizes enzymatic digestion of skin collagen matrix , followed by plucking of hair follicles and isolation of single cell suspensions or tissue fragments for cell culture.

Isolamento e la coltura di cellule staminali epiteliali da pelle umana

The homeostasis of all self-renewing tissues is dependent on adult stem cells. As undifferentiated stem cells undergo asymmetric divisions, they generate ...

Efficient Derivation of Human Cardiac Precursors and Cardiomyocytes from Pluripotent Human Embryonic Stem Cells with Small Molecule Induction

To date, the lack of a suitable human cardiac cell source has been the major setback in regenerating the human myocardium, either by cell-based transplantation or by cardiac tissue engineering1-3. Cardiomyocytes become terminally-differentiated soon after birth and lose their ability to proliferate. There is no evidence that stem/progenitor cells derived from other sources, such as the bone marrow or the cord blood, are able to give rise to the contractile heart muscle cells following transplantation into the heart1-3. The need to regenerate or repair the damaged heart muscle has not been met by adult stem cell therapy, either endogenous or via cell delivery1-3. The genetically stable human embryonic stem cells (hESCs) have unlimited expansion ability and unrestricted plasticity, proffering a pluripotent reservoir for in vitro derivation of large supplies of human somatic cells that are restricted to the lineage in need of repair and regeneration4,5. Due to the prevalence of cardiovascular disease worldwide and acute shortage of donor organs, there is intense interest in developing hESC-based therapies as an alternative approach. However, how to channel the wide differentiation potential of pluripotent hESCs efficiently and predictably to a desired phenotype has been a major challenge for both developmental study and clinical translation. Conventional approaches rely on multi-lineage inclination of pluripotent cells through spontaneous germ layer differentiation, resulting in inefficient and uncontrollable lineage-commitment that is often followed by phenotypic heterogeneity and instability, hence, a high risk of tumorigenicity6-8 (see a schematic in Fig. 1A). In addition, undefined foreign/animal biological supplements and/or feeders that have typically been used for the isolation, expansion, and differentiation of hESCs may make direct use of such cell-specialized grafts in patients problematic9-11. To overcome these obstacles, we have resolved the elements of a defined culture system necessary and sufficient for sustaining the epiblast pluripotence of hESCs, serving as a platform for de novo derivation of clinically-suitable hESCs and effectively directing such hESCs uniformly towards clinically-relevant lineages by small molecules12 (see a schematic in Fig. 1B). After screening a variety of small molecules and growth factors, we found that such defined conditions rendered nicotinamide (NAM) sufficient to induce the specification of cardiomesoderm direct from pluripotent hESCs that further progressed to cardioblasts that generated human beating cardiomyocytes with high efficiency (Fig. 2). We defined conditions for induction of cardioblasts direct from pluripotent hESCs without an intervening multi-lineage embryoid body stage, enabling well-controlled efficient derivation of a large supply of human cardiac cells across the spectrum of developmental stages for cell-based therapeutics.

We have established a protocol for induction of cardioblasts direct from pluripotent human embryonic stem cells maintained under defined conditions with small molecules, which enables derivation of a large supply of human cardiac progenitors and functional cardiomyocytes for cardiovascular repair.

Derivazione efficiente dei diritti dell&#39;uomo e precursori cardiaci e cardiomiociti pluripotenti da cellule staminali embrionali umane con induzione piccole molecole

To date, the lack of a suitable human cardiac cell source has been the major setback in regenerating the human myocardium, either by cell-based ...

Na&iuml;ve Adult Stem Cells Isolation from Primary Human Fibroblast Cultures

Over the last decade, several adult stem cell populations have been identified in human skin 1-4. The isolation of multipotent adult dermal precursors was first reported by Miller F. D laboratory 5, 6. These early studies described a multipotent precursor cell population from adult mammalian dermis 5. These cells--termed SKPs, for skin-derived precursors-- were isolated and expanded from rodent and human skin and differentiated into both neural and mesodermal progeny, including cell types never found in skin, such as neurons 5. Immunocytochemical studies on cultured SKPs revealed that cells expressed vimentin and nestin, an intermediate filament protein expressed in neural and skeletal muscle precursors, in addition to fibronectin and multipotent stem cell markers 6. Until now, the adult stem cells population SKPs have been isolated from freshly collected mammalian skin biopsies.
Recently, we have established and reported that a population of skin derived precursor cells could remain present in primary fibroblast cultures established from skin biopsies 7. The assumption that a few somatic stem cells might reside in primary fibroblast cultures at early population doublings was based upon the following observations: (1) SKPs and primary fibroblast cultures are derived from the dermis, and therefore a small number of SKP cells could remain present in primary dermal fibroblast cultures and (2) primary fibroblast cultures grown from frozen aliquots that have been subjected to unfavorable temperature during storage or transfer contained a small number of cells that remained viable 7. These rare cells were able to expand and could be passaged several times. This observation suggested that a small number of cells with high proliferation potency and resistance to stress were present in human fibroblast cultures 7.
We took advantage of these findings to establish a protocol for rapid isolation of adult stem cells from primary fibroblast cultures that are readily available from tissue banks around the world (Figure 1). This method has important significance as it allows the isolation of precursor cells when skin samples are not accessible while fibroblast cultures may be available from tissue banks, thus, opening new opportunities to dissect the molecular mechanisms underlying rare genetic diseases as well as modeling diseases in a dish.

Na&#239;ve Adult Stem Cells Isolation from Primary Human Fibroblast Cultures

We report a method to isolate na&#239;ve multipotent skin-derived precursor (SKP) cells from primary human fibroblast cultures. We show that these SKPs derived from fibroblast cultures share similar stem cell properties to the ones derived directly from human skin biopsies. These cells express the neural crest marker, nestin, in addition to the multipotent markers such as OCT4 and Nanog.

Naïve Adult Stem Cells isolamento da colture primarie di fibroblasti umani

Over the last decade, several adult stem cell  populations have been identified in human skin 1-4.  The isolation of multipotent adult dermal precursors ...

Manual Isolation of Adipose-derived Stem Cells from Human Lipoaspirates

In 2001, researchers at the University of California, Los Angeles, described the isolation of a new population of adult stem cells from liposuctioned adipose tissue that they initially termed Processed Lipoaspirate Cells or PLA cells. Since then, these stem cells have been renamed as Adipose-derived Stem Cells or ASCs and have gone on to become one of the most popular adult stem cells populations in the fields of stem cell research and regenerative medicine. Thousands of articles now describe the use of ASCs in a variety of regenerative animal models, including bone regeneration, peripheral nerve repair and cardiovascular engineering. Recent articles have begun to describe the myriad of uses for ASCs in the clinic. The protocol shown in this article outlines the basic procedure for manually and enzymatically isolating ASCs from large amounts of lipoaspirates obtained from cosmetic procedures. This protocol can easily be scaled up or down to accommodate the volume of lipoaspirate and can be adapted to isolate ASCs from fat tissue obtained through abdominoplasties and other similar procedures.

In 2001, researchers at UCLA described the isolation of a population of adult stem cells, termed Adipose-derived Stem Cells or ASCs, from adipose tissue. This article outlines the isolation of ASCs from lipoaspirates using a manual, enzymatic digestion protocol using collagenase.

Isolamento Manuale di cellule staminali derivate da tessuto adiposo da lipoaspirato umani

In 2001, researchers at the University of  California, Los Angeles, described the isolation of a new population of adult  stem cells from liposuctioned ...

Isolation of Primary Myofibroblasts from Mouse and Human Colon Tissue

The myofibroblast is a stromal cell of the gastrointestinal (GI) tract that has been gaining considerable attention for its critical role in many GI functions. While several myofibroblast cell lines are commercially available to study these cells in vitro, research results from a cell line exposed to experimental cell culture conditions have inherent limitations due to the overly reductionist nature of the work. Use of primary myofibroblasts offers a great advantage in terms of confirming experimental findings identified in a cell line. Isolation of primary myofibroblasts from an animal model allows for the study of myofibroblasts under conditions that more closely mimic the disease state being studied. Isolation of primary myofibroblasts from human colon tissue provides arguably the most relevant experimental data, since the cells come directly from patients with the underlying disease. We describe a well-established technique that can be utilized to isolate primary myofibroblasts from both mouse and human colon tissue. These isolated cells have been characterized to be alpha-smooth muscle actin and vimentin-positive, and desmin-negative, consistent with subepithelial intestinal myofibroblasts. Primary myofibroblast cells can be grown in cell culture and used for experimental purposes over a limited number of passages.

The myofibroblast is an influential stromal cell of the gastrointestinal tract that regulates important physiologic processes in both normal and disease states. We describe a technique that allows for the isolation of primary myofibroblasts from both mouse and human colon tissue, which can be utilized for in vitro experimentation.

Isolamento di primaria miofibroblasti da mouse e Colon Tessuto umano

The myofibroblast is  a stromal cell of the gastrointestinal (GI) tract that has been gaining  considerable attention for its critical role in many GI ...

Isolation of Blood-vessel-derived Multipotent Precursors from Human Skeletal Muscle

Since the discovery of mesenchymal stem/stromal cells (MSCs), the native identity and localization&#160;of MSCs have been obscured by their retrospective isolation in culture. Recently, using fluorescence-activated cell sorting (FACS), we and other researchers prospectively identified and purified three subpopulations of multipotent precursor cells associated with the vasculature of human skeletal muscle. These three cell populations: myogenic endothelial cells (MECs), pericytes (PCs), and adventitial cells (ACs), are localized respectively to the three structural layers of blood vessels: intima, media, and adventitia. All of these human blood-vessel-derived stem cell (hBVSC) populations not only express classic MSC markers but also possess mesodermal developmental potentials similar to typical MSCs. Previously, MECs, PCs, and ACs have been isolated through distinct protocols and subsequently characterized in separate studies. The current isolation protocol, through modifications to the isolation process and adjustments in the selective cell surface markers, allows us to simultaneously purify all three hBVSC subpopulations by FACS from a single human muscle biopsy. This new method will not only streamline the isolation of multiple BVSC subpopulations but also facilitate future clinical applications of hBVSCs for distinct therapeutic purposes.

Blood vessels within human skeletal muscle harbor several multi-lineage precursor populations that are ideal for regenerative applications. This isolation method allows simultaneous purification of three multipotent precursor cell populations respectively from three structural layers of blood vessels: myogenic endothelial cells from intima, pericytes from media, and adventitial cells from adventitia.

Isolamento dei vasi sanguigni derivati ​​da Multipotent precursori del muscolo scheletrico umano

Since the discovery of mesenchymal stem/stromal cells (MSCs), the native identity and localization&#160;of MSCs have been obscured by their retrospective ...

Isolation of Myofibroblasts from Mouse and Human Esophagus

Murine and human esophageal myofibroblasts are generated via enzymatic digestion. Neonate (8-12 day old) murine esophagus is harvested, minced, washed, and subjected to enzymatic digestion with collagenase and dispase for 25 min. Human esophageal resection specimens are stripped of muscularis propria and adventitia and the remaining mucosa is minced, and subjected to enzymatic digestion with collagenase and dispase for up to 6 hr. Cultured cells express &#945;-SMA and vimentin and express desmin weakly or not at all. Culture conditions are not conducive to growth of epithelial, hematopoietic, or endothelial cells. Culture purity is further confirmed by flow cytometric evaluation of cell surface marker expression of potential contaminating hematopoietic and endothelial cells. The described technique is straightforward and results in consistent generation of non-hematopoieitc, non-endothelial stromal cells. Limitations of this technique are inherent to the use of primary cultures in molecular biology studies, i.e., the unavoidable variability encountered among cultures established across different mice or humans. Primary cultures however are a more representative reflection of the in vivo state compared to cell lines. These methods also provide investigators the ability to isolate and culture stromal cells from different clinical and experimental conditions, allowing comparisons between groups. Characterized esophageal stromal cells can also be used in functional studies investigating epithelial-stromal interactions in esophageal disorders.

We present a protocol to generate primary cultures of murine and human esophageal stromal cells with a myofibroblast phenotype. Cultured cells have spindle shaped morphology, express &#945;-SMA and vimentin, and lack epithelial, hematopoietic and endothelial cell surface markers. Characterized stromal cells can be used in functional studies of epithelial-stromal interactions.

Isolamento di miofibroblasti da mouse e Esofago umano

Murine and human esophageal myofibroblasts are generated via enzymatic digestion. Neonate (8-12 day old) murine esophagus is harvested, minced, washed, ...

Isolation of Mitochondria from Minimal Quantities of Mouse Skeletal Muscle for High Throughput Microplate Respiratory Measurements

Dysfunctional skeletal muscle mitochondria play a role in altered metabolism observed with aging, obesity and Type II diabetes. Mitochondrial respirometric assays from isolated mitochondrial preparations allow for the assessment of mitochondrial function, as well as determination of the mechanism(s) of action of drugs and proteins that modulate metabolism. Current isolation procedures often require large quantities of tissue to yield high quality mitochondria necessary for respirometric assays. The methods presented herein describe how high quality purified mitochondria (~ 450 &#181;g) can be isolated from minimal quantities (~75-100 mg) of mouse skeletal muscle for use in high throughput respiratory measurements. We determined that our isolation method yields 92.5&#177; 2.0% intact mitochondria by measuring citrate synthase activity spectrophotometrically. In addition, Western blot analysis in isolated mitochondria resulted in the faint expression of the cytosolic protein, GAPDH, and the robust expression of the mitochondrial protein, COXIV. The absence of a prominent GAPDH band in the isolated mitochondria is indicative of little contamination from non-mitochondrial sources during the isolation procedure. Most importantly, the measurement of O2 consumption rate with micro-plate based technology and determining the respiratory control ratio (RCR) for coupled respirometric assays shows highly coupled (RCR; &#62;6 for all assays) and functional mitochondria. In conclusion, the addition of a separate mincing step and significantly reducing motor driven homogenization speed of a previously reported method has allowed the isolation of high quality and purified mitochondria from smaller quantities of mouse skeletal muscle that results in highly coupled mitochondria that respire with high function during microplate based respirometirc assays.

Here, we present a modification of a previously reported method that allows for the isolation of high quality and purified mitochondria from smaller quantities of mouse skeletal muscle. This procedure results in highly coupled mitochondria that respire with high function during microplate based respirometirc assays.

Isolamento dei Piccoli RNA non codificanti dal siero umano

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Nuclei di isolamento dal tessuto neuronale del cervello umano Postmortem

Isolamento di cellule staminali da xenotrapianti di cancro pancreatico umano

Isolamento e la coltura di cellule staminali epiteliali da pelle umana

Derivazione efficiente dei diritti dell'uomo e precursori cardiaci e cardiomiociti pluripotenti da cellule staminali embrionali umane con induzione piccole molecole

Naïve Adult Stem Cells isolamento da colture primarie di fibroblasti umani

Isolamento Manuale di cellule staminali derivate da tessuto adiposo da lipoaspirato umani

Isolamento di primaria miofibroblasti da mouse e Colon Tessuto umano

Isolamento dei vasi sanguigni derivati da Multipotent precursori del muscolo scheletrico umano

Isolamento di miofibroblasti da mouse e Esofago umano

L'isolamento di mitocondri da minime quantità di muscolo scheletrico del mouse per misurazioni High Throughput micropiastre respiratorie

Isolamento dei Piccoli RNA non codificanti dal siero umano

Riepilogo

Esplora Altri Video

Capitoli in questo video

Nuclei di isolamento dal tessuto neuronale del cervello umano Postmortem

Isolamento di cellule staminali da xenotrapianti di cancro pancreatico umano

Isolamento e la coltura di cellule staminali epiteliali da pelle umana

Derivazione efficiente dei diritti dell'uomo e precursori cardiaci e cardiomiociti pluripotenti da cellule staminali embrionali umane con induzione piccole molecole

Naïve Adult Stem Cells isolamento da colture primarie di fibroblasti umani

Isolamento Manuale di cellule staminali derivate da tessuto adiposo da lipoaspirato umani

Isolamento di primaria miofibroblasti da mouse e Colon Tessuto umano

Isolamento dei vasi sanguigni derivati ​​da Multipotent precursori del muscolo scheletrico umano

Isolamento di miofibroblasti da mouse e Esofago umano

L'isolamento di mitocondri da minime quantità di muscolo scheletrico del mouse per misurazioni High Throughput micropiastre respiratorie

Isolamento dei vasi sanguigni derivati da Multipotent precursori del muscolo scheletrico umano