We thank Naoya Asai at Nagoya University for providing useful suggestions for the development of low-temperature antigen retrieval for free-floating jejunum sections. This work was supported by Grants-in-Aid for Scientific Research (KAKENHI) (C) in 2012 (JP25460493) and (B) in 2017 (JP17H04065) from the Japan Society for the Promotion of Science (JSPS), A-STEP grants in 2014 (AS251Z02522Q) and in 2015 (AS262Z00715Q) from the Japan Science and Technology Agency (JST), and a Takeda Visionary Research Grant 2014 from the Takeda Science Foundation (to M.A.).

All methods described here were approved by the Animal Care and Use Committee of the Institute for Developmental Research, Aichi Human Service Center (application number: M-03).
1. Preparations
<ol>
	<li>Prepare 10 L of phosphate buffered saline (PBS): 32.27 g of Na2HPO4&#183;12H2O, 4.5 g of NaH2PO4&#183;2H2O, 80.0 g of NaCl added to ultrapure water to a final volume of 10 L. Store solution at room temperature (RT).</li>
	<li>Prepare 200 mL of PBS-T: 200 mL of PBS from step 1.1 with 100 &#181;L of polyoxyethylene(10) octylphenyl ether to a final concentration of 0.05% (vol:vol). Store at RT.</li>
	<li>While wearing gloves and eye protection, prepare 50 mL of 15% sucrose in 10% buffered neutral formalin solution: 7.5 g of sucrose added to 10% buffered neutral formalin solution (Table of Materials) to a final volume of 50 mL. Store at RT. 
	CAUTION: Inhalation and/or skin/eye contact with formaldehyde in 10% buffered neutral formalin solution can be hazardous. Handle with caution.</li>
	<li>Prepare 1.5 mL of 200 units/mL phalloidin-fluorescent dye conjugate stock solution: phalloidin-fluorescent dye conjugate (300 units in 1 vial, lyophilized solids, excitation and emission wavelengths: 581 nm and 609 nm, respectively) suspended in 1.5 mL of methanol. Store solution in the dark at -20 &#176;C.</li>
	<li>Prepare 5 mg/mL 4&#39;,6-diamidino-2-phenylindole, dihydrochloride (DAPI) stock solution: 10 mg of DAPI in 2 mL of N,N-dimethylformamide (DMF). Store solution in the dark at -20 &#176;C.</li>
	<li>Prepare 5% bovine serum albumin (BSA) in PBS: 0.5 g of BSA, 10 mL of PBS. Store at 4 &#176;C.</li>
	<li>Remove the beveled tip of an 18-gauge straight needle using a nipper, and pinch the nipped end with a pincher in a lengthwise direction to allow liquid to flow through the needle lumen (Figure 1A1). 
	NOTE: The protocol can be paused here.</li>
</ol>
2. Animal Dissection and Isolation of Jejunum
<ol>
	<li>Perfusion fixation of a mouse
	<ol>
		<li>Wear gloves and work in a well-ventilated area.</li>
		<li>Prepare a 100 mL glass beaker, 10% buffered neutral formalin solution, surgical tools (scissors, forceps), a metallic tray, 6-0 nylon cut sutures, an 18-gauge straight needle prepared as in 1.7, a 22-gauge winged needle, a 20-mL syringe.</li>
		<li>Load 20 mL of 10% buffered neutral formalin solution from the glass beaker into the 20-mL syringe, and attach the 22-gauge winged needle to the outlet.</li>
		<li>Prepare liquid gelatin by adding 1 g of gelatin powder to 20 mL of PBS (final 5% gelatin) in a 50-mL centrifuge tube. After soaking at RT for 15 min, incubate at 50 &#176;C in a water bath for 15 min without shaking.</li>
		<li>Briefly vortex, and incubate at 50 &#176;C for another 15 min to completely dissolve the gelatin. Leave the tube at RT until use.</li>
		<li>Euthanize an adult mouse by cervical dislocation.</li>
		<li>Place the mouse from step 2.1.6 on a metallic tray and make a small incision on the skin through the ensiform cartilage using surgical tools.</li>
		<li>Expand the incision with both hands to expose the thoracic and abdominal regions.</li>
		<li>Open the peritoneum to expose the diaphragm, and then open the diaphragm on both sides.</li>
		<li>Cut the thoracic cage along the anterior axillary lines on both sides, then remove the thoracic wall by cutting in a transverse direction at the position of thymus to expose the heart.</li>
		<li>Make a small incision on the auricle of the right atrium to drain the blood and insert a 22-gauge winged needle into the apex of the left ventricle. Push the plunger to perfuse the tissues with 10% buffered neutral formalin solution.</li>
		<li>After exposing organs in the pelvis, cut off the end of the rectum from the anus, and separate the intestines from the body by cutting the mesentery.</li>
		<li>To isolate the jejunum, cut the intestines at 4 cm from the anal side of the gastric antrum. Discard the anal half of the remaining small intestine.</li>
		<li>Clip the jejunum in half to facilitate the flushing procedure. Load 20 mL of 10% buffered neutral formalin solution into the 20-mL syringe, and attach the 18-gauge straight needle prepared in step 1.7 to the outlet.</li>
		<li>Inject 10% buffered neutral formalin solution from one end of the clipped jejunum to flush out the intestinal contents and to fix the gut lumen surface (Figure 1A2).</li>
		<li>Wash the gut lumen by injecting PBS as described in step 2.1.15.</li>
		<li>Flush liquid gelatin into the gut lumen as described in step 2.1.15 to replace PBS with liquid gelatin.</li>
		<li>Close one end of the clipped jejunum by suture ligation using a 6-0 nylon cut suture, fill the jejunum with liquid gelatin, and close the opposite end by suture ligation (Figure 1A3).</li>
		<li>Add four suture knots to fit a sausage-shaped jejunum section to the depressed portion of a cryomold (Figure 1A4). 
		NOTE: For cryomolds with a 20 mm x 25 mm x 5 mm depressed section, a ~20 mm sausage-like jejunum section is preferable.</li>
		<li>Soak the tissues in 50 mL of 15% sucrose in 10% buffered neutral formalin solution overnight at 4 &#176;C. 
		NOTE: These steps ensure cryoprotection by sucrose and protein fixation by formalin of gelatin and tissue. Formalin-gelatinized gelatin does not melt at RT, whereas non-fixed gelatinized gelatin at 4 &#176;C melts at RT.</li>
	</ol>
	</li>
</ol>
3. Snap Freezing of Gelatin-filled Jejunum Tissues
<ol>
	<li>By cutting the jejunum at the suture knots, three sausage-like jejunum pieces with both ends ligated are obtained (Figure 1A4). Align the sausage-like pieces in a cryomold for addition of embedding compound for preparation of frozen tissue specimens.</li>
	<li>Snap freeze the cryomold in isopentane cooled with liquid nitrogen. Store cryomolds at -80 &#176;C 
	NOTE: The protocol can be paused here.</li>
</ol>
4. Immunofluorescence of Tuft Cells Using Free-floating Cryosections
<ol>
	<li>Cryosectioning
	<ol>
		<li>Set both the cryostat chamber temperature (CT) and object temperature (OT) to -22 &#176;C. Place the frozen tissue block in a cryomold in the cryostat chamber for at least 15 min.</li>
		<li>Add 3 mL of PBS to a 35-mm culture dish.</li>
		<li>Remove the frozen tissue block from the cryomold and cut the block in half with a razor blade to expose the transverse section of the jejunum. Mount one half of the block on a chuck (a cryostat adaptor) to section the cutting plane with the razor blade.</li>
		<li>Section the gelatin-filled jejunum into 30 &#181;m-thick sections. Use frozen forceps to gently transfer the sections into the 35-mm culture dish prepared in step 4.1.2 (Figure 2B, right).</li>
	</ol>
	</li>
	<li>Application of primary antibodies
	<ol>
		<li>Wash the free-floating sections in the 35-mm culture dish 3 times for 5 min each with 3 mL PBS-T with mild shaking on a reciprocal shaker (approximately 36 times/min).</li>
		<li>Prepare antigen retrieval solution: 0.3 mL of antigen retrieval solution concentrate (Table of Materials) in 2.7 mL of ultrapure water. Add 3 mL of antigen retrieval solution to the 35-mm culture dish containing free-floating sections.</li>
		<li>Close the lid, seal the gap between the dish and the lid with a strip of vinyl tape, and incubate at 50 &#176;C in a hybridization incubator for 3 h without shaking.</li>
		<li>Remove the dish from the incubator and cool at RT for 20 min. After removing the vinyl tape, wash the sections 3 times for 5 min each with 3 mL of PBS-T and mild shaking.</li>
		<li>Aspirate the PBS-T and add 5 drops of blocking solution (Table of Materials) onto the sections. Incubate at RT for 5 min with mild shaking.</li>
		<li>Prepare the primary antibody solution: 495 &#181;L of 5% BSA in PBS with 5 &#181;L of phospho-Y1798 girdin (pY1798) antibodies (Table of Materials). Add 500 &#181;L of primary antibody solution onto the sections (the blocking solution does not need to be removed).</li>
		<li>Place the dish in a humidified incubation chamber and incubate overnight at 4 &#176;C with mild shaking. 
		NOTE: The overnight incubation can be extended to up to three nights.</li>
	</ol>
	</li>
	<li>Application of secondary antibodies
	<ol>
		<li>Wash the sections 3 times for 5 min each in 3 mL of PBS-T with mild shaking.</li>
		<li>Prepare diluted DAPI stock solution: 2 &#181;L of DAPI stock solution (Step 1.5), 998 &#181;L of PBS.</li>
		<li>Make secondary antibody solution: 476 &#181;L of 5% BSA in PBS, 10.5 &#181;L of diluted DAPI solution, 12.5 &#181;L of phalloidin-fluorescent dye conjugate stock solution, 1 &#181;L of goat anti-rabbit IgG-fluorescent dye conjugate (wavelength: excitation 496 nm, emission 520 nm).</li>
		<li>After aspirating the PBS-T, apply the secondary antibody solution, and incubate in a light-shielded incubation chamber at RT for 30 min with mild shaking.</li>
		<li>Wash the sections 3 times for 5 min each with 3 mL of PBS-T and mild shaking.</li>
		<li>After the final wash, remove the PBS-T and replace with 3 mL of PBS lacking polyoxyethylene(10) octylphenyl ether. Transfer the dish to a stereoscopic microscope.</li>
		<li>Place 200 &#181;L of PBS in a droplet on the center of a MAS-coated white glass slide and transfer one jejunum section from the dish into the droplet using a P200 pipet tip.</li>
		<li>After adjusting the section alignment under the stereoscopic microscope, aspirate all remaining PBS surrounding the section.</li>
		<li>Add 20 &#181;L of aqueous mounting media and place a 20 x 20 mm coverslip atop the media.</li>
		<li>Immediately seal the coverslip edges with xylene-based mounting media. Place the slide on a wooden mappe and allow the xylene-based mounting media to solidify at RT for 2 - 3 h. 
		NOTE: The protocol can be paused here. After the xylene-based mounting media solidifies, the slides can be stored for 2 - 3 weeks in a light-shielded slide box at RT.</li>
	</ol>
	</li>
</ol>
5. Confocal Microscopy
<ol>
	<li>Put immersion oil on the 63X objective of a confocal microscope. Turn the coverslip-slide down and place the slide on the stage.</li>
	<li>Digitize the TC images acquired at laser wavelengths 405, 488, and 555 nm, and save the images in tiff format (.tiff). 
	NOTE: Choose a detection filter set that is appropriate for the fluorescence dyes (i.e., excitation/emission maxima: 358/461 nm, 490/525, and 590/617).</li>
</ol>

<ol>
	<li>Kuga, D., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Tyrosine+phosphorylation+of+an+actin-binding+protein+Girdin+specifically+marks+tuft+cells+in+human+and+mouse+gut.">Tyrosine phosphorylation of an actin-binding protein Girdin specifically marks tuft cells in human and mouse gut.</a> J Histochem Cytochem. 65 (6), 347-366 (2017).</li><li>Jarvi, O., Keyrilainen, O. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=On+the+cellular+structures+of+the+epithelial+invasions+in+the+glandular+stomach+of+mice+caused+by+intramural+application+of+20-methylcholantren.">On the cellular structures of the epithelial invasions in the glandular stomach of mice caused by intramural application of 20-methylcholantren.</a> Acta Pathol Microbiol Scand Suppl. 39 (Suppl 111), 72-73 (1956).</li><li>Enomoto, A., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Akt/PKB+regulates+actin+organization+and+cell+motility+via+Girdin/APE.">Akt/PKB regulates actin organization and cell motility via Girdin/APE.</a> Dev Cell. 9 (3), 389-402 (2005).</li><li>Asai, M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Similar+phenotypes+of+Girdin+germ-line+and+conditional+knockout+mice+indicate+a+crucial+role+for+Girdin+in+the+nestin+lineage.">Similar phenotypes of Girdin germ-line and conditional knockout mice indicate a crucial role for Girdin in the nestin lineage.</a> Biochem Biophys Res Commun. 426 (4), 533-538 (2012).</li><li>Kitamura, T., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Regulation+of+VEGF-mediated+angiogenesis+by+the+Akt/PKB+substrate+Girdin.">Regulation of VEGF-mediated angiogenesis by the Akt/PKB substrate Girdin.</a> Nat Cell Biol. 10 (3), 329-337 (2008).</li><li>Wang, Y., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Girdin+is+an+intrinsic+regulator+of+neuroblast+chain+migration+in+the+rostral+migratory+stream+of+the+postnatal+brain.">Girdin is an intrinsic regulator of neuroblast chain migration in the rostral migratory stream of the postnatal brain.</a> J Neurosci. 31 (22), 8109-8122 (2011).</li><li>Nahorski, M. S., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=CCDC88A+mutations+cause+PEHO-like+syndrome+in+humans+and+mouse.">CCDC88A mutations cause PEHO-like syndrome in humans and mouse.</a> Brain. 139 (Pt 4), 1036-1044 (2016).</li><li>Lin, C., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Tyrosine+Phosphorylation+of+the+G+alpha-Interacting+Protein+GIV+Promotes+Activation+of+Phosphoinositide+3-Kinase+During+Cell+Migration.">Tyrosine Phosphorylation of the G alpha-Interacting Protein GIV Promotes Activation of Phosphoinositide 3-Kinase During Cell Migration.</a> Science signaling. 4 (192), ra64 (2011).</li><li>Omori, K., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Girdin+is+phosphorylated+on+tyrosine+1798+when+associated+with+structures+required+for+migration.">Girdin is phosphorylated on tyrosine 1798 when associated with structures required for migration.</a> Biochem Biophys Res Commun. 458 (4), 934-940 (2015).</li><li>Goto, H., Inagaki, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Production+of+a+site-+and+phosphorylation+state-specific+antibody.">Production of a site- and phosphorylation state-specific antibody.</a> Nat Protoc. 2 (10), 2574-2581 (2007).</li><li>Wulf, E., Deboben, A., Bautz, F. A., Faulstich, H., Wieland, T. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Fluorescent+phallotoxin,+a+tool+for+the+visualization+of+cellular+actin.">Fluorescent phallotoxin, a tool for the visualization of cellular actin.</a> Proc Natl Acad Sci U S A. 76 (9), 4498-4502 (1979).</li><li>Jiao, Y., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+simple+and+sensitive+antigen+retrieval+method+for+free-floating+and+slide-mounted+tissue+sections.">A simple and sensitive antigen retrieval method for free-floating and slide-mounted tissue sections.</a> J Neurosci Methods. 93 (2), 149-162 (1999).</li><li>Feltkamp-Vroom, T. M., Boode, J. H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=An+embedding+and+sectioning+technique+for+immunohistochemical+studies+of+minute+specimens+of+tissue.">An embedding and sectioning technique for immunohistochemical studies of minute specimens of tissue.</a> J Clin Pathol. 23 (2), 188-189 (1970).</li><li>Ushida, K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Pre-embedding+technique+with+low+melting+temperature+gelatin+for+preparation+of+histological+sections.">Pre-embedding technique with low melting temperature gelatin for preparation of histological sections.</a> Proceeding of the Annual Meeting on Technologies in Biological Research. 36, 66-69 (2014).</li><li>Howitt, M. R., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Tuft+cells,+taste-chemosensory+cells,+orchestrate+parasite+type+2+immunity+in+the+gut.">Tuft cells, taste-chemosensory cells, orchestrate parasite type 2 immunity in the gut.</a> Science. 351 (6279), 1329-1333 (2016).</li><li>von Moltke, J., Ji, M., Liang, H. E., Locksley, R. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Tuft-cell-derived+IL-25+regulates+an+intestinal+ILC2-epithelial+response+circuit.">Tuft-cell-derived IL-25 regulates an intestinal ILC2-epithelial response circuit.</a> Nature. 529 (7585), 221-225 (2016).</li><li>Gerbe, F., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Intestinal+epithelial+tuft+cells+initiate+type+2+mucosal+immunity+to+helminth+parasites.">Intestinal epithelial tuft cells initiate type 2 mucosal immunity to helminth parasites.</a> Nature. 529 (7585), 226-230 (2016).</li></ol>

The authors have nothing to disclose.

This protocol was designed to allow researchers without histology experience to obtain reliable images of tuft cells (TCs). This protocol has three critical points: 1) The use of site- and phosphorylation status-specific rabbit polyclonal antibodies against human girdin phosphorylated at tyrosine 1798 (pY1798 antibodies) that were obtained from a specific company (Immuno-Biological Laboratories = Company X); 2) Gelatin filling of the jejunum; and 3) Low-temperature antigen retrieval. In the broadest sense, phosphorylation status-specific antibodies can be categorized as modification-specific antibodies that recognize a specific type of post-translational modification (e.g. acetylation, methylation, or phosphorylation) of a protein at a specific amino acid residue. Omori et al. and company X jointly generated pY1798 antibodies by immunizing rabbits with phosphorylated peptide, and purifying the resulting antibodies using solid-phase chromatography with an unphosphorylated peptide following Goto&#39;s method9,10. pY1798 antibodies were intensively validated with in vitro phosphorylation assays using full-length human girdin expression vectors with/without a point mutation at tyrosine 17989. Subsequently, Kuga et al. found that pY1798 antibodies from company X are a specific and sensitive marker of intestinal TCs1. Thus, inclusion of pY1798 antibodies from company X is a critical point in this protocol.
Gelatin contains collagen extracted from animal tissues and has long been used to embed tissue specimens for histochemical studies using cryosections13. Low-melting-point gelatin, which is gelatinized at 4 &#176;C but melts at room temperature, began to be applied to avoid adverse effects of heat needed to maintain the gelatin in a liquid state during embedding14. In this protocol, low-melting-point gelatin made from gelatin powder that gelatinizes at 4 &#176;C and melts at RT was used to preserve the morphology of transverse cryosections of mouse jejunum. When this gelatin was used to completely fill the jejunum, samples were then formalin-fixed to achieve irreversible gelatinization. Heat-induced antigen retrieval is an effective method to expose antigens that are masked by aldehyde-containing fixatives12. However, the high temperatures (95 - 99 &#176;C for 30 min) commonly used for analysis of paraffin sections can damage the morphology of the tissue/gelatin complex. Here we used low-temperature antigen retrieval (50 &#176;C for 3 h) that allows both antigen retrieval and preservation of tissue morphology.
pY1798 antibodies can label TCs not only in mouse jejunum, but also in multiple organs (stomach, ileum, colon, and gallbladder) from mice and humans1. However, because pY1798 signals in unfixed tissues from any tissue will rapidly degrade, this protocol includes formalin injection into the jejunum lumen (step 2.1.15., Figure 1A2).
There are limitations associated with the thickness of free-floating cryosections. Although thin cryosections can be advantageous in terms of translucency for microscopy, the thinness makes these sections physically vulnerable. In contrast, thick cryosections are physically sturdy, but have lower antibody permeability into the section. In this protocol, 30 &#181;m-thick sections were used that were both physically stable and permeable to antibodies. Although this method was designed for researchers without extensive experience in histology, if the protocol should fail, pY1798/villin/DAPI triple staining of paraffin sections similar to that used by Kuga et al. could be performed1. Paraffin sections were not used here to avoid difficulties associated with phalloidin staining of F-actin in paraffin sections.
Due to the conservation of amino acid sequences adjacent to girdin tyrosine-1798, pY1798 antibodies can be applied to stain TCs in species other than mouse, including rat and human. The gelatin filling used in this protocol can also be applied for other hollow organs. Indeed, apart from pY1798 or TC, the combination of gelatin filling with low temperature antigen retrieval may be useful for revealing notoriously &#34;difficult&#34; epitopes in the mouse gut, and as a consequence, may be of interest for many researchers.
The biological role of girdin and the significance of its phosphorylation in TCs is unclear. However, a study by Lin et al. suggested that tyrosine phosphorylation of girdin is associated with the degree of F-actin polymerization8. Meanwhile, Kuga et al. found that lethal doses of apoptosis inducers (e.g., cisplatin, X-ray radiation) caused a large increase in the relative frequency of TCs in the mouse small intestine that they hypothesized may be associated with the possible conversion from enterocytes to TCs, in synchronization with the phosphorylation of girdin in microvilli1. This possibility will require additional investigation in the future. Three groups recently observed rapid increase in TC frequency following parasite infection15,16,17. Thus, this free-floating staining could be used not only to analyze endoscopically-collected human gut tissues, but TC accumulation could also aid in diagnosis of parasite infection in the human gut.

Tuft cells (TCs) are minor scattered components of gastrointestinal epithelia that are characterized by apical tufts and spool-shaped somas1. Although TCs were first described in 19562, TC function remains unclear, partly due to a lack of reliable TC markers.
Enomoto et al. first characterized the actin binding protein girdin3, which is expressed in the nervous system, as well as in non-neural tissues such as blood vessels, heart valves, tendons, and skeletal muscle4. Mice with genetic ablation of girdin display growth retardation and multiple brain anomalies4,5,6. Meanwhile, loss-of-function mutation in human girdin is associated with progressive encephalopathy, severe retardation, and early onset epileptic seizures7.
In 2011, Lin et al. identified dynamic phosphorylation of girdin at tyrosine 1798 mediated by tyrosine kinases such as EGFR and Src8. They also showed that phosphorylated girdin is required for actin remodeling to trigger cell migration8. Omori et al. developed site- and phosphorylation status-specific antibodies against human girdin phosphorylated at tyrosine 1798 (pY1798 antibodies) following Goto&#39;s protocol, and validated the antibodies using site-directed mutagenesis of expression vectors carrying full-length girdin9,10. In 2017, Kuga et al. reported that pY1798 labels TCs with high specificity and high sensitivity1. The pY1798 antibodies were shown to be superior to previous TC markers based on excellent staining properties that revealed the whole cell shape, including the characteristic &#39;tuft&#39; on the lumenal tip, yet the biological role of girdin and phospho-girdin in TC function remained unclear1.
The method described in this study involves immunofluorescence staining, a histological technique to mark a specific protein on tissue using a primary antibody against a target protein and a fluorescence-conjugated secondary antibody against the primary antibody. The purpose of this method is to allow researchers with limited histological experience to obtain high quality TC images. This protocol uses free-floating cryosections that avoid the need for slide-mounted cryosections, or paraffin section. However, free-floating sections are fragile due to the absence of support from a glass slide and the section thickness can lessen antibody permeability. This protocol includes two approaches that overcome these issues: 1) filling the entire jejunum lumen with gelatin to preserve the morphology of free-floating sections throughout the staining procedures, and 2) use of low-temperature antigen retrieval to intensify pY1798 signals.

<table>
	<tbody>
		<tr>
			<td>Slc:DDY 6-week-old female mice</td>
			<td>Chubu Kagaku Shizai</td>
			<td>Not applicable</td>
			<td></td>
		</tr>
		<tr>
			<td>Disodium hydrogenphosphate 12-water (Na2HPO412H2O)</td>
			<td>Wako</td>
			<td>196-02835</td>
			<td></td>
		</tr>
		<tr>
			<td>Sodium dihydroenphosphate Dihydrate (NaH2PO42H2O</td>
			<td>Wako</td>
			<td>199-02825</td>
			<td></td>
		</tr>
		<tr>
			<td>Sodium chloride (NaCl)</td>
			<td>Wako</td>
			<td>199-10665</td>
			<td></td>
		</tr>
		<tr>
			<td>Triton X-100,&#160; Polyoxyethylene(10) octylphenyl ether</td>
			<td>Katayama Chemical</td>
			<td>Not applicable</td>
			<td></td>
		</tr>
		<tr>
			<td>Sucrose</td>
			<td>Wako</td>
			<td>190-00013</td>
			<td></td>
		</tr>
		<tr>
			<td>10% buffered neutral formalin solution</td>
			<td>Muto Chemical</td>
			<td>20215</td>
			<td>Step 1.3.</td>
		</tr>
		<tr>
			<td>Phalloidin-fluorescent dye conjugate, Alexa Fluor 594 phalloidin</td>
			<td>ThermoFisher Scientific</td>
			<td>A12381</td>
			<td></td>
		</tr>
		<tr>
			<td>Methanol</td>
			<td>Nacalai Tesque</td>
			<td>21915-35</td>
			<td></td>
		</tr>
		<tr>
			<td>DAPI (4&#39;,6-diamidino-2-phenylindole, dihydrochloride)</td>
			<td>ThermoFisher Scientific</td>
			<td>D1306</td>
			<td></td>
		</tr>
		<tr>
			<td>N.N-dimethylformamide (DMF)</td>
			<td>Nacalai Tesque</td>
			<td>13015-75</td>
			<td></td>
		</tr>
		<tr>
			<td>Bovine serum albumin</td>
			<td>Sigma</td>
			<td>A9647-10G</td>
			<td></td>
		</tr>
		<tr>
			<td>18-gauge stainless steel straight needle</td>
			<td>Terumo</td>
			<td>NN-1838R</td>
			<td></td>
		</tr>
		<tr>
			<td>U.S.P. 6-0, 60 cm nylon cut suture, Crownjun</td>
			<td>Kono Seisakusho</td>
			<td>Not applicable</td>
			<td></td>
		</tr>
		<tr>
			<td>22-gauge winged needle</td>
			<td>Terumo</td>
			<td>SV-22DLK</td>
			<td></td>
		</tr>
		<tr>
			<td>20 mL TERUMO syringe</td>
			<td>Terumo</td>
			<td>SS-20ES</td>
			<td></td>
		</tr>
		<tr>
			<td>50 mL centrifuge tube</td>
			<td>TPP</td>
			<td>91050</td>
			<td></td>
		</tr>
		<tr>
			<td>15 mL Iwaki centrifuge tubes</td>
			<td>Iwaki</td>
			<td>2325-015</td>
			<td></td>
		</tr>
		<tr>
			<td>1.5 mL micro test tube</td>
			<td>Star</td>
			<td>RSV-MTT1.5</td>
			<td></td>
		</tr>
		<tr>
			<td>Gelatin powder, Gelare-blanc</td>
			<td>Nitta Biolab</td>
			<td>2809</td>
			<td></td>
		</tr>
		<tr>
			<td>Embedding compound for frozen tissue specimen, O.C.T. Compound 118 mL 12 piece</td>
			<td>Sakura FineTech</td>
			<td>4583</td>
			<td></td>
		</tr>
		<tr>
			<td>Cryomold, CRYO DISH No. 3, 125 piece, well size 20 x 25 x 5 (mm)</td>
			<td>Shoei Work&#39;s</td>
			<td>1101-3</td>
			<td></td>
		</tr>
		<tr>
			<td>Isopentane</td>
			<td>Nacalai Tesque</td>
			<td>26404-75</td>
			<td></td>
		</tr>
		<tr>
			<td>Falcon cell culture dish 35 x 10mm Easy-Grip</td>
			<td>Corning</td>
			<td>353001</td>
			<td></td>
		</tr>
		<tr>
			<td>Antigen retrieval solution concentrate, Target Retrieval Solution pH 9 10x</td>
			<td>Dako</td>
			<td>S2367</td>
			<td>Antigen retrieval solution concentrate in step 4.2.2.</td>
		</tr>
		<tr>
			<td>Protein Block</td>
			<td>Dako</td>
			<td>X0909</td>
			<td>Blocking solution in 4.2.5.</td>
		</tr>
		<tr>
			<td>Phospho-Y1798 girdin (pY1798) antibodies</td>
			<td>Immuno-Biological Laboratories (IBL) = Company X</td>
			<td>28143</td>
			<td>Phospho-Y1798 girdin antibodies in step 4.2.6.</td>
		</tr>
		<tr>
			<td>Goat anti-Rabbit IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor 488</td>
			<td>ThermoFisher Scientific</td>
			<td>A11034</td>
			<td></td>
		</tr>
		<tr>
			<td>Aquous mounting media, Prolong Gold Antifade Mountant</td>
			<td>ThermoFisher Scientific</td>
			<td>P36930</td>
			<td></td>
		</tr>
		<tr>
			<td>Coverslips, Matsunami Micro Cover Glass 22 x 22 mm 100 pcs Thickness No.1</td>
			<td>Matsunami Glass</td>
			<td>C022221</td>
			<td></td>
		</tr>
		<tr>
			<td>Entellan New, xylene-based mounting media for microscopy</td>
			<td>Merck Millipore</td>
			<td>107961</td>
			<td></td>
		</tr>
		<tr>
			<td>MAS-coated slide glass white</td>
			<td>Matsunami Glass</td>
			<td>MI-MAS-01</td>
			<td></td>
		</tr>
		<tr>
			<td>Wooden Mappe KO-type</td>
			<td>Shoei Work&#39;s</td>
			<td>99-40007</td>
			<td></td>
		</tr>
		<tr>
			<td>Immersion Oil 518 F Fluorescence Free 20 ml</td>
			<td>Zeiss</td>
			<td>444960</td>
			<td></td>
		</tr>
		<tr>
			<td>Pipettes, Pipetman P (P2, P20, P200, P1000)</td>
			<td>Gilson</td>
			<td>F144801, F123600, F123601, F123602</td>
			<td></td>
		</tr>
		<tr>
			<td>Ultrapure water production system</td>
			<td>Advantec</td>
			<td>GS-590</td>
			<td></td>
		</tr>
		<tr>
			<td>Plastic glove, Star Nitrile Glove</td>
			<td>Star</td>
			<td>RSU-NGVM</td>
			<td></td>
		</tr>
		<tr>
			<td>Cryostat</td>
			<td>Leica Microsystems</td>
			<td>CM1950</td>
			<td></td>
		</tr>
		<tr>
			<td>Deep freezer, SANYO Ultra Low</td>
			<td>Sanyo</td>
			<td>MDF-382</td>
			<td></td>
		</tr>
		<tr>
			<td>Showcase refrigerator</td>
			<td>Nihon Freezer</td>
			<td>NC-ME50EC</td>
			<td></td>
		</tr>
		<tr>
			<td>Water bath, Thermominder SDminiN (to dissolve gelatin at 50 C)</td>
			<td>Taitec</td>
			<td>0068750-000</td>
			<td></td>
		</tr>
		<tr>
			<td>Hybridization incubator (for antigen retrieval at 50 C)</td>
			<td>Taitec</td>
			<td>HB-100</td>
			<td></td>
		</tr>
		<tr>
			<td>Incubation chamber for immunostaining</td>
			<td>Cosmo Bio</td>
			<td>10DO</td>
			<td></td>
		</tr>
		<tr>
			<td>Reciprocal shaker for immunohistochemistry (for room temperature)</td>
			<td>Taitec</td>
			<td>NR-1</td>
			<td></td>
		</tr>
		<tr>
			<td>Reciprocal shaker for immunohistochemistry (for 4 C)</td>
			<td>Tokyo Rika Kikai</td>
			<td>MMS-3010</td>
			<td></td>
		</tr>
		<tr>
			<td>Stereoscopic microscope (for tissue handling)</td>
			<td>Olympus</td>
			<td>SZ61</td>
			<td></td>
		</tr>
		<tr>
			<td>Stereoscopic microscope (for Figure 1B)</td>
			<td>Leica Microsystems</td>
			<td>M165FC</td>
			<td></td>
		</tr>
		<tr>
			<td>Fluorescence microscope (for Figure 3)</td>
			<td>Nikon</td>
			<td>E800</td>
			<td></td>
		</tr>
		<tr>
			<td>Confocal laser-scanning microscope</td>
			<td>Zeiss</td>
			<td>LSM700</td>
			<td></td>
		</tr>
	</tbody>
</table>

use of anti-phospho-girdin antibodies to visualize intestinal tuft cells in free-floating mouse jejunum cryosections

The actin binding protein girdin is a cytosolic protein that is required for actin remodeling to trigger cell migration in various tissues. Girdin is phosphorylated by both receptor and non-receptor tyrosine kinases at tyrosine 1798. Omori et al. developed site- and phosphorylation status-specific antibodies against human girdin at tyrosine-1798 (pY1798), which specifically bind to phosphorylated tyrosine-1798, but not to unphosphorylated tyrosine-1798. pY1798 antibodies have been used to specifically label tuft cells (TCs) that are present in mammalian gastrointestinal tissues, but the function of these cells is unclear. This protocol allows the robust visualization of TCs in the jejunum using pY1798 antibodies and immunofluorescence. To ensure successful and simple TC visualization, this protocol includes two histological techniques: production of free-floating cryosections from gelatin-filled jejunum tissue, and low-temperature antigen retrieval at 50 &#176;C for 3 h. Filling the jejunum with gelatin maintains the shape of free-floating sections throughout the staining procedure, whereas low-temperature antigen retrieval ensures robust signals from TCs. Successful use of this protocol results in pY1798 staining of TCs distributed from villus tip to crypt. Stained TCs have a spool-shaped soma and fluorescent signals condense at the lumenal tip, which corresponds to the protruding &#39;tuft.&#39;&#160;Phalloidin staining colocalized with pY1798-positive TCs at the thickened brush border, and corresponds to a rootlet mass extending from the TC tuft. This protocol could be used to examine TCs in human biopsy samples collected with gastrointestinal endoscopes. Furthermore, TCs were recently reported to accumulate following parasite infection in mice, suggesting that this protocol could have applications for diagnosis of parasite infections in the human gut.

Gelatin-filling of the jejunum
A typical procedure for filling mouse jejunum with gelatin is shown (Figure 1A), as are the benefits of gelatin-filling (Figure 1B). In brief, the beveled tip of an 18-gauge straight needle was removed to protect against piercing the gut wall (Figure 1A1). Gelatin filling was achieved using 10% buffered neutral formalin solution injected from one end of a clipped jejunum section to flush the intestine and to fix the gut lumen surface (Figure 1A2) prior to filling with liquid gelatin (Figure 1A3). The resulting sausage-like pieces (Figure 1A4) were embedded, frozen, and transversely sectioned into 30 &#181;m-thick slices in a cryostat. In the absence of gelatin filling, jejunal sections tend to kink, allowing the villi to swing backward (Figure 1B, left). Gelatin filling preserves the round disc-shape of the sections and maintains upright positioning of the villi (Figure 1B, right). The images clearly indicate the benefit afforded by gelatin filling in preserving the morphology of free-floating jejunum sections.
Successful imaging of intestinal tuft cells
pY1798 antibodies can be applied for variable immunostaining techniques, including dot blotting, western blotting, paraffin section staining, thaw-mounted cryosection staining, or free-floating cryosection staining1,9. In this protocol, we focused on free-floating cryosections for fluorescence staining of TCs in mouse jejunum using pY1798 antibodies, phalloidin, and DAPI staining to demonstrate the structural characteristics of TCs1. In general, TCs are scattered at a rate of approximately one TC/100 epithelial cells from villus tip to crypt1. The representative results show that pY1798 reproducibly delineates entire TCs, including the membrane, cytoplasm of the spool-shaped soma, and the strongly stained lumenal tip, where robust signal condensation corresponds to the protruding &#39;tuft&#39; of a TC1 (Figure 2A-2B). Meanwhile, phalloidin is a phallotoxin, a family of poisonous bicyclic heptapeptides from the mushroom Amanita phalloides, and has high affinity for filamentous actin (F-actin), which is present in microvilli that form the intestinal brush border11. Phalloidin reproducibly and prominently marks the thickened brush border that corresponds to a mass of rootlets extending from the tuft1. Thus, the consistent co-localization of pY1798 signals (spool-shaped soma, signal condensation at the lumenal tip) with the prominently thickened phalloidin-positive brush border demonstrates that this protocol successfully identifies TCs regardless of whether they are located on a villus (Figure 2A) or in a crypt (Figure 2B).
Low-temperature antigen retrieval is effective for staining free-floating sections
Heat-based antigen retrieval at 95 - 99 &#176;C is widely used for analysis of paraffin sections and slide-mounted cryosections. However, applying this approach to free-floating sections without causing damage is difficult because such sections are generally more fragile than slide-mounted sections that are supported by the slide12. Since low-temperature antigen retrieval (50 &#176;C for 3 h) using a water bath did not affect the morphology of the free-floating jejunum sections in preliminary experiments, we evaluated the objective effectiveness of antigen retrieval in a blind test, which statistically confirmed the effectiveness of low-temperature antigen retrieval (Figure 3).
<img alt="Figure 1" class="xfigimg" src="/files/ftp_upload/57475/57475fig1.jpg" /> 
Figure 1: Gelatin filling of jejunum sections for morphological preservation of cryosections 
(A) Photographs of procedures for intraluminal filling of mouse jejunum with gelatin. (A1) The beveled tip of an 18-gauge straight needle was removed to avoid piercing the gut wall. (A2) Buffered neutral formalin solution (10%) was injected in one end of the clipped jejunum to flush the intestinal contents and fix the gut lumen surface. (A3) Clipped jejunum filled with liquid gelatin and both ends ligated using a 6-0 nylon suture (black arrows). (A4) Four more suture knots (white arrows) placed between the pre-existing suture knots (black arrows) yielded three shorter pieces. The tissue will then be separated into three sausage-like pieces at the two indicated positions (white arrowheads). (B) Beneficial effects of gelatin-filling on free-floating cryosection morphology. Without gelatin filling, sections tend to kink, allowing the villi to easily swing backward (left); with gelatin filling, a 30 &#181;m-thick section maintains a disc shape and the upright position of the villi is preserved (right). Images were photographed using Nomarski differential interference contrast. Scale bars, 1 mm. <a href="https://cloudflare.jove.com/files/ftp_upload/57475/57475fig1large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 2" class="xfigimg" src="/files/ftp_upload/57475/57475fig2.jpg" /> 
Figure 2: Representative fluorescence images of mouse intestinal tuft cells 
Confocal fluorescence images of TCs on a villus (A) or in a crypt (B), in free-floating mouse jejunum sections stained with site-specific and phosphorylation-status-specific antibodies against girdin phosphorylated at tyrosine 1798 (pY1798, green, optimal excitation/emission wavelengths 490/525 nm), phalloidin (red, 590/617 nm), 4,6-diamidino-2-phenylindole (DAPI, blue, 358/461 nm). The area enclosed by white boxes in the low magnification images (scale bars, 50 &#181;m) is expanded on the right (scale bars, 10 &#181;m). pY1798 antibodies reproducibly stain TCs, regardless of location (on a villus (A), or in a crypt (B)), with staining present at the lumenal tip (arrows), membrane, and cytoplasm of the spool-shaped TC soma. A prominently thickened brush border in phalloidin staining (arrowheads) is another distinctive sign of TCs. <a href="https://cloudflare.jove.com/files/ftp_upload/57475/57475fig2large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 3" class="xfigimg" src="/files/ftp_upload/57475/57475fig3.jpg" /> 
Figure 3: Low-temperature antigen retrieval enhances pY1798 immunofluorescence 
Two groups of experimental procedures were compared to confirm the effectiveness of low-temperature antigen retrieval. Free-floating jejunum sections (30 &#181;m thick, n = 13) from a single frozen block were divided into two groups, and sections from each group were stained following the complete protocol or the same protocol lacking low-temperature antigen retrieval (step 4.2.2). After staining, sections were mounted on individual slides labelled with group numbers, and the labelling on each slide was covered with masking tape. All slides were shuffled, labelled with new numbers on the tape, and observed under fluorescence microscopy through an FITC filter. Total counts of visible pY1798-positive TCs were averaged in each group, and were displayed in a bar graph (mean &#177; standard deviation). A two-tailed t-test was performed to compare the average counts between the two groups. P-values below 0.05 were considered statistically significant. Low-temperature antigen retrieval significantly improved the effectiveness of pY1798-immunofluorescence. <a href="https://cloudflare.jove.com/files/ftp_upload/57475/57475fig3large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>

Watch this Scientific Journal Video about Use of Anti-phospho-girdin Antibodies to Visualize Intestinal Tuft Cells in Free-Floating Mouse Jejunum Cryosections at JoVE.com

Use of Anti-phospho-girdin Antibodies to Visualize Intestinal Tuft Cells in Free-Floating Mouse Jejunum Cryosections

Kuga et al. discovered that phosphorylation-status specific antibodies against the actin binding protein girdin phosphorylated at tyrosine 1798 (pY1798) can be used to label tuft cells (TCs). This protocol allows robust visualization of TCs using immunofluorescent staining of free-floating jejunum cryosections with pY1798 antibodies.

The actin binding protein girdin is a cytosolic protein that is required for actin remodeling to trigger cell migration in various tissues. Girdin is ...

use-anti-phospho-girdin-antibodies-to-visualize-intestinal-tuft-cells

Universidad de Cartagena UDEC

Research

JoVE Journal

Biology

11.3K Views.  Aichi Human Service Center. Kuga et al. discovered that phosphorylation-status specific antibodies against the actin binding protein girdin phosphorylated at tyrosine 1798 (pY1798) can be used to label tuft cells (TCs). This protocol allows robust visualization of TCs using immunofluorescent staining of free-floating jejunum cryosections with pY1798 antibodies.

Video: Use of Anti-phospho-girdin Antibodies to Visualize Intestinal Tuft Cells in Free-Floating Mouse Jejunum Cryosections

Catheterization of Intestinal Loops in Ruminants

The intestine is a complex structure that is involved not only in absorption of nutrients, but also acts as a barrier between the individual and the outside world. As such, the intestine plays a pivotal role in immunosurveillance and protection from enteric pathogens. Investigating intestinal physiology and immunology commonly employs 'intestinal loops' as an experimental model. The majority of these loop models are non-recovery surgical procedures that study short-term (&lt;24 hr) changes in the intestine (1-3). We previously created a recovery intestinal loop model to specifically measure long-term (&lt;6 mo) immunological changes in the intestine of sheep following exposure to vaccines, adjuvants, and viruses (4). This procedure localized treatments to a specific 'loop', allowing us to sample this area of the intestine. A significant drawback of this method is the single window of opportunity to administer treatments (i.e. at the time of surgery). Furthermore, samples of both the intestinal mucosa and luminal contents can only be taken at the termination of the project. Other salient limitations of the above model are that the surgical manipulation and requisite post-operative measures (e.g. administration of antibiotics and analgesics) can directly affect the treatment itself and/or alter immune function, thereby confounding results. Therefore, we modified our intestinal loop model by inserting long-term catheters into the loops. Sheep recover fully from the procedure, and are unaffected by the exteriorized catheters. Notably, the establishment of catheters in loops allows us to introduce multiple treatments over an extended interval, following recovery from surgery and clearance of drugs administered during surgery and the post-operative period.

We describe a novel surgical method for catheterizing 'intestinal loops' within the ileum of sheep. Once animals have recovered from surgery and have cleared antibiotics and analgesics, multiple treatments can be deposited directly in loops via the catheters.

The intestine is a complex structure that is involved not only in absorption of nutrients, but also acts as a barrier between the individual and the ...

A Technique to Simultaneously Visualize Virus-Specific CD8+ T Cells and Virus-Infected Cells In situ

The numbers and locations of virus-specific CD8+ T cells relative to the numbers and locations of their infected cell targets is thought to be critical in determining outcomes that range from clearance to chronic persistent infections. We describe here a method for assessing the spatial and quantitative relationships between immune effector (E) virus-specific CD8+ T cells and infected targets (T) that combines in situ tetramer (IST) staining to detect virus-specific CD8+ T cells and in situ hybridization (ISH) to detect viral-RNA+ cells in the tissues where the battle between immune defenses and infection takes place. The combination of IST staining and ISH, abbreviated ISTH, enables visualization and mapping of the locations of immune effector cells and targets, and facile determination of E:T ratios.  These parameters in turn can then be used to determine the relationships between spatial proximity, and the timing and magnitude of the immune response that predict outcomes in early infection.

A Technique to Simultaneously Visualize Virus-Specific CD8+ T Cells and Virus-Infected Cells In situ

A technique combining in situ tetramer staining and in situ hybridization (ISTH) enables visualization, mapping and analysis of the spatial proximity of virus-specific CD8+ T cells to their virus-infected targets, and determination of the quantitative relationships between these immune effectors and targets to infection outcomes.

The numbers and locations of virus-specific CD8+ T cells relative to the numbers and locations of their infected cell targets is thought to be critical in ...

In vivo Imaging and Therapeutic Treatments in an Orthotopic Mouse Model of Ovarian Cancer

Human cancer and response to therapy is better represented in orthotopic animal models. This paper describes the development of an orthotopic mouse model of ovarian cancer, treatment of cancer via oral delivery of drugs, and monitoring of tumor cell behavior in response to drug treatment in real time using in vivo imaging system. In this orthotopic model, ovarian tumor cells expressing luciferase are applied topically by injecting them directly into the mouse bursa where each ovary is enclosed. Upon injection of D-luciferin, a substrate of firefly luciferase, luciferase-expressing cells generate bioluminescence signals. This signal is detected by the in vivo imaging system and allows for a non-invasive means of monitoring tumor growth, distribution, and regression in individual animals. Drug administration via oral gavage allows for a maximum dosing volume of 10 mL/kg body weight to be delivered directly to the stomach and closely resembles delivery of drugs in clinical treatments. Therefore, techniques described here, development of an orthotopic mouse model of ovarian cancer, oral delivery of drugs, and in vivo imaging, are useful for better understanding of human ovarian cancer and treatment and will improve targeting this disease.

In vivo Imaging and Therapeutic Treatments in an Orthotopic Mouse Model of Ovarian Cancer

Orthotopic animal models of ovarian cancer replicate better human disease and therefore enhance our understanding of cancer progression and tumor response to therapy. A mouse model receives an intrabursal injection of luciferase-expressing ovarian tumor cells. Treatment is administered via oral gavage. Tumor growth is monitored by in vivo imaging system.

Human cancer and response to therapy is better represented in orthotopic animal models.  This paper describes the development of an orthotopic mouse model ...

Analysis of Pluripotent Stem Cells by using Cryosections of Embryoid Bodies

Embryonic stem (ES) cells are pluripotent cells derived from the inner cell mass of blastocyst-stage early mammalian embryos 1. A crucial stage in the differentiation of ES cells is the formation of embryoid bodies (EBs) aggregates 2, 3. EB formation is based on spontaneous aggregation when ES cells are cultured in non adherent plates. Three-dimensional EB recapitulates many aspects of early mammalian embryogenesis and differentiate into the three germ layers: ectoderm, mesoderm and endoderm 4.
Immunofluorescence and in situ hybridization are widely used techniques for the detection of target proteins and mRNA present in cells of a tissue section 5, 6, 7. Here we present a simple technique to generate high quality cryosections of embryoid bodies. This approach relies on the spatial orientation of EB embedding in OCT followed by the cryosection technique. The resulting sections can be subjected to a wide variety of analytical procedures in order to characterize populations of cells containing certain proteins, RNA or DNA. In this sense, the preparation of EB cryosections (10&mu;m) are essential tools for histology staining analysis (e.g. Hematoxilin and Eosin, DAPI), immunofluorescence (e.g. Oct4, nestin) or in situ hybridization. This technique can also help to understand aspects of embryogenesis with regards to the maintenance of the tri-dimensional spherical structure of EBs.

Pluripotent stem cells growing in suspension differentiate into embryoid bodies (EBs). Here we demonstrate how to obtain high quality EB cryosections useful for studying cellular and molecular aspects of embryogenesis, while preserving their organization as aggregates.

Embryonic stem (ES) cells are pluripotent cells derived from the inner cell mass of blastocyst-stage early mammalian embryos 1. A crucial stage in the ...

Generation of Mice Derived from Induced Pluripotent Stem Cells

The production of induced pluripotent stem cells (iPSCs) from somatic cells provides a means to create valuable tools for basic research and may also produce a source of patient-matched cells for regenerative therapies. iPSCs may be generated using multiple protocols and derived from multiple cell sources. Once generated, iPSCs are tested using a variety of assays including immunostaining for pluripotency markers, generation of three germ layers in embryoid bodies and teratomas, comparisons of gene expression with embryonic stem cells (ESCs) and production of chimeric mice with or without germline contribution2. Importantly, iPSC lines that pass these tests still vary in their capacity to produce different differentiated cell types2. This has made it difficult to establish which iPSC derivation protocols, donor cell sources or selection methods are most useful for different applications.
The most stringent test of whether a stem cell line has sufficient developmental potential to generate all tissues required for survival of an organism (termed full pluripotency) is tetraploid embryo complementation (TEC)3-5. Technically, TEC involves electrofusion of two-cell embryos to generate tetraploid (4n) one-cell embryos that can be cultured in vitro to the blastocyst stage6. Diploid (2n) pluripotent stem cells (e.g. ESCs or iPSCs) are then injected into the blastocoel cavity of the tetraploid blastocyst and transferred to a recipient female for gestation (see Figure 1). The tetraploid component of the complemented embryo contributes almost exclusively to the extraembryonic tissues (placenta, yolk sac), whereas the diploid cells constitute the embryo proper, resulting in a fetus derived entirely from the injected stem cell line.
Recently, we reported the derivation of iPSC lines that reproducibly generate adult mice via TEC1. These iPSC lines give rise to viable pups with efficiencies of 5-13%, which is comparable to ESCs3,4,7 and higher than that reported for most other iPSC lines8-12. These reports show that direct reprogramming can produce fully pluripotent iPSCs that match ESCs in their developmental potential and efficiency of generating pups in TEC tests. At present, it is not clear what distinguishes between fully pluripotent iPSCs and less potent lines13-15. Nor is it clear which reprogramming methods will produce these lines with the highest efficiency. Here we describe one method that produces fully pluripotent iPSCs and "all- iPSC" mice, which may be helpful for investigators wishing to compare the pluripotency of iPSC lines or establish the equivalence of different reprogramming methods.

Generating induced pluripotent stem cell (iPSC) lines produces lines of differing developmental potential even when they pass standard tests for pluripotency. Here we describe a protocol to produce mice derived entirely from iPSCs, which defines the iPSC lines as possessing full pluripotency1.

The production of induced pluripotent stem cells (iPSCs) from somatic cells provides a means to create valuable tools for basic research and may also ...

Use of LysoTracker to Detect Programmed Cell Death in Embryos and Differentiating Embryonic Stem Cells

Programmed cell death (PCD) occurs in adults to maintain normal tissue homeostasis and during embryological development to shape tissues and organs1,2,6,7. During development, toxic chemicals or genetic alterations can cause an increase in PCD or change PCD patterns resulting in developmental abnormalities and birth defects3-5. To understand the etiology of these defects, the study of embryos can be complemented with in vitro assays that use differentiating embryonic stem (ES) cells.
Apoptosis is a well-studied form of PCD that involves both intrinsic and extrinsic signaling to activate the caspase enzyme cascade. Characteristic cell changes include membrane blebbing, nuclear shrinking, and DNA fragmentation. Other forms of PCD do not involve caspase activation and may be the end-result of prolonged autophagy. Regardless of the PCD pathway, dying cells need to be removed. In adults, the immune cells perform this function, while in embryos, where the immune system has not yet developed, removal occurs by an alternative mechanism. This mechanism involves neighboring cells (called "non-professional phagocytes") taking on a phagocytic role-they recognize the 'eat me' signal on the surface of the dying cell and engulf it8-10. After engulfment, the debris is brought to the lysosome for degradation. Thus regardless of PCD mechanism, an increase in lysosomal activity can be correlated with increased cell death.
To study PCD, a simple assay to visualize lysosomes in thick tissues and multilayer differentiating cultures can be useful. LysoTracker dye is a highly soluble small molecule that is retained in acidic subcellular compartments such as the lysosome11-13. The dye is taken up by diffusion and through the circulation. Since penetration is not a hindrance, visualization of PCD in thick tissues and multi-layer cultures is possible12,13. In contrast, TUNEL (Terminal deoxynucleotidyl transferase dUTP nick end labeling) analysis14, is limited to small samples, histological sections, and monolayer cultures because the procedure requires the entry/permeability of a terminal transferase.
In contrast to Aniline blue, which diffuses and is dissolved by solvents, LysoTracker Red DND-99 is fixable, bright, and stable. Staining can be visualized with standard fluorescent or confocal microscopy in whole-mount or section using aqueous or solvent-based mounting media12,13. Here we describe protocols using this dye to look at PCD in normal and sonic hedgehog null mouse embryos. In addition, we demonstrate analysis of PCD in differentiating ES cell cultures and present a simple quantification method. In summary, LysoTracker staining can be a great complement to other methods of detecting PCD.

We present a simple protocol to visualize regions of programmed cell death (PCD) in mouse embryos and differentiating embryonic stem (ES) cell cultures using a highly soluble dye called LysoTracker.

Programmed cell death (PCD) occurs in adults to maintain normal tissue homeostasis and during embryological development to shape tissues and ...

Use of Time Lapse Microscopy to Visualize Anoxia-induced Suspended Animation in C. elegans Embryos

Caenorhabdits elegans has been used extensively in the study of stress resistance, which is facilitated by the transparency of the adult and embryo stages as well as by the availability of genetic mutants and transgenic strains expressing a myriad of fusion proteins1-4. In addition, dynamic processes such as cell division can be viewed using fluorescently labeled reporter proteins. The study of mitosis can be facilitated through the use of time-lapse experiments in various systems including intact organisms; thus the early C. elegans embryo is well suited for this study. Presented here is a technique by which in vivo imaging of sub-cellular structures in response to anoxic (99.999% N2; &lt;2 ppm O2) stress is possible using a simple gas flow through setup on a high-powered microscope. A microincubation chamber is used in conjunction with nitrogen gas flow through and a spinning disc confocal microscope to create a controlled environment in which animals can be imaged in vivo. Using GFP-tagged gamma tubulin and histone, the dynamics and arrest of cell division can be monitored before, during and after exposure to an oxygen-deprived environment. The results of this technique are high resolution, detailed videos and images of cellular structures within blastomeres of embryos exposed to oxygen deprivation.

Use of Time Lapse Microscopy to Visualize Anoxia-induced Suspended Animation in C. elegans Embryos

Described here is an in vivo technique to image sub-cellular structures in animals exposed to anoxia using a gas flow through microincubation chamber in conjunction with a spinning disc confocal microscope. This method is straightforward and flexible enough to suit a variety of experimental parameters and model systems.

Caenorhabdits elegans has been used extensively in the study of stress resistance, which is facilitated by the transparency of the adult and embryo stages ...

Induction and Analysis of Epithelial to Mesenchymal Transition

Epithelial to mesenchymal transition (EMT) is essential for proper morphogenesis during development. Misregulation of this process has been implicated as a key event in fibrosis and the progression of carcinomas to a metastatic state. Understanding the processes that underlie EMT is imperative for the early diagnosis and clinical control of these disease states. Reliable induction of EMT in vitro is a useful tool for drug discovery as well as to identify common gene expression signatures for diagnostic purposes. Here we demonstrate a straightforward method for the induction of EMT in a variety of cell types. Methods for the analysis of cells pre- and post-EMT induction by immunocytochemistry are also included. Additionally, we demonstrate the effectiveness of this method through antibody-based array analysis and migration/invasion assays.

A straightforward method is described for the induction of epithelial to mesenchymal transition (EMT) in a variety of cell types. Methods for the analysis of cells in EMT states by immunocytochemistry are included.

Epithelial  to mesenchymal transition (EMT) is essential for proper morphogenesis during  development. Misregulation of this  process has been implicated ...

Nephrotoxin Microinjection in Zebrafish to Model Acute Kidney Injury

The kidneys are susceptible to harm from exposure to chemicals they filter from the bloodstream. This can lead to organ injury associated with a rapid decline in renal function and development of the clinical syndrome known as acute kidney injury (AKI). Pharmacological agents used to treat medical circumstances ranging from bacterial infection to cancer, when administered individually or in combination with other drugs, can initiate AKI. Zebrafish are a useful animal model to study the chemical effects on renal function in vivo, as they form an embryonic kidney comprised of nephron functional units that are conserved with higher vertebrates, including humans. Further, zebrafish can be utilized to perform genetic and chemical screens, which provide opportunities to elucidate the cellular and molecular facets of AKI and develop therapeutic strategies such as the identification of nephroprotective molecules. Here, we demonstrate how microinjection into the zebrafish embryo can be utilized as a paradigm for nephrotoxin studies.

Renal injuries incurred from nephrotoxins, which include drugs ranging from antibiotics to chemotherapeutics, can result in complex disorders whose pathogenesis remains incompletely understood. This protocol demonstrates how zebrafish can be used for disease modeling of these conditions, which can be applied to the identification of renoprotective measures.

The kidneys are susceptible to harm from exposure to chemicals they filter from the bloodstream. This can lead to organ injury associated with a rapid ...

A Graphical User Interface for Software-assisted Tracking of Protein Concentration in Dynamic Cellular Protrusions

Filopodia are dynamic, finger-like cellular protrusions associated with migration and cell-cell communication. In order to better understand the complex signaling mechanisms underlying filopodial initiation, elongation and subsequent stabilization or retraction, it is crucial to determine the spatio-temporal protein activity in these dynamic structures. To analyze protein function in filopodia, we recently developed a semi-automated tracking algorithm that adapts to filopodial shape-changes, thus allowing parallel analysis of protrusion dynamics and relative protein concentration along the whole filopodial length. Here, we present a detailed step-by-step protocol for optimized cell handling, image acquisition and software analysis. We further provide instructions for the use of optional features during image analysis and data representation, as well as troubleshooting guidelines for all critical steps along the way. Finally, we also include a comparison of the described image analysis software with other programs available for filopodia quantification. Together, the presented protocol provides a framework for accurate analysis of protein dynamics in filopodial protrusions using image analysis software.

We present a software solution for semi-automated tracking of relative protein concentration along the length of dynamic cellular protrusions.

Filopodia are dynamic, finger-like cellular protrusions associated with migration and cell-cell communication. In order to better understand the complex ...

Use of Anti-phospho-girdin Antibodies to Visualize Intestinal Tuft Cells in Free-Floating Mouse Jejunum Cryosections

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Use of LysoTracker to Detect Programmed Cell Death in Embryos and Differentiating Embryonic Stem Cells

Use of Time Lapse Microscopy to Visualize Anoxia-induced Suspended Animation in C. elegans Embryos

Induction and Analysis of Epithelial to Mesenchymal Transition

Nephrotoxin Microinjection in Zebrafish to Model Acute Kidney Injury

A Graphical User Interface for Software-assisted Tracking of Protein Concentration in Dynamic Cellular Protrusions